Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13g18
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81463-8|CAB03849.2|  346|Caenorhabditis elegans Hypothetical pr...    32   0.37 
Z92803-8|CAB07245.1|  814|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U94835-1|AAC47510.1|  814|Caenorhabditis elegans multiple exosto...    28   6.1  
AB077851-1|BAB83878.1|  814|Caenorhabditis elegans heparan sulfa...    28   6.1  

>Z81463-8|CAB03849.2|  346|Caenorhabditis elegans Hypothetical
           protein C06B8.6 protein.
          Length = 346

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +3

Query: 276 LQEHRHHILSTDTICIFSLANCIFLSGYFFMLRSGSGSSYIKLCSILNLHF 428
           L  H   +LS   + IFS   CIF SG+  + ++    S +K  S+L  HF
Sbjct: 19  LDSHEFLLLSLHIVAIFSFPLCIF-SGWVIVFKTPPSMSSVKF-SLLTFHF 67


>Z92803-8|CAB07245.1|  814|Caenorhabditis elegans Hypothetical
           protein K01G5.6 protein.
          Length = 814

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -1

Query: 135 KCNMD-MYLERQRHLTCKSEFCF-IPNNMFY 49
           KC+ +   LER+R L   S FCF +P+ MF+
Sbjct: 317 KCSQENCSLERRRQLIGSSTFCFLLPSEMFF 347


>U94835-1|AAC47510.1|  814|Caenorhabditis elegans multiple exostoses
           homolog 2 protein.
          Length = 814

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -1

Query: 135 KCNMD-MYLERQRHLTCKSEFCF-IPNNMFY 49
           KC+ +   LER+R L   S FCF +P+ MF+
Sbjct: 317 KCSQENCSLERRRQLIGSSTFCFLLPSEMFF 347


>AB077851-1|BAB83878.1|  814|Caenorhabditis elegans heparan sulfate
           GlcNAc transferase-I/II protein.
          Length = 814

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -1

Query: 135 KCNMD-MYLERQRHLTCKSEFCF-IPNNMFY 49
           KC+ +   LER+R L   S FCF +P+ MF+
Sbjct: 317 KCSQENCSLERRRQLIGSSTFCFLLPSEMFF 347


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,619,098
Number of Sequences: 27780
Number of extensions: 308683
Number of successful extensions: 601
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)