Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13g18
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.7  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              23   4.0  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    23   4.0  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   5.3  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   7.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.2  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 7/35 (20%), Positives = 20/35 (57%)
 Frame = +3

Query: 333 ANCIFLSGYFFMLRSGSGSSYIKLCSILNLHFHYY 437
           ++C+    +F+ + +  GS YI L  ++ +++  +
Sbjct: 192 SHCVVCQNFFYQIYATLGSFYIPLFVMIQVYYKIF 226


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 577 KKSWVKLFSKSLFQIVFISIYSN 509
           K+++  +F  S+F I+ I IYSN
Sbjct: 2   KENFSIMFIHSIFLILIIFIYSN 24


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 577 KKSWVKLFSKSLFQIVFISIYSN 509
           K+++  +F  S+F I+ I IYSN
Sbjct: 2   KENFSIMFIHSIFLILIIFIYSN 24


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 529 FISIYSNFDVRYLA*VFFPVN*IDILL 449
           F++ +  F + YLA  F PV   DIL+
Sbjct: 315 FVACWLPFFILYLATPFVPVEPPDILM 341


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 78  IHSCTLNAAAALNTYPYCI 134
           I +CT  A A L+ Y Y I
Sbjct: 312 IPACTCKAVACLDPYVYAI 330


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 255 SLE*Y*QLQEHRHHILST 308
           +L+ +  LQ H HH+ ST
Sbjct: 137 TLQRHHHLQNHHHHLQST 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,865
Number of Sequences: 438
Number of extensions: 3979
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)