Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13g17
(482 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr... 31 0.58
U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical p... 29 1.3
U41625-5|AAA83327.1| 700|Caenorhabditis elegans Suppressor of a... 29 1.3
AY091467-1|AAM44123.1| 700|Caenorhabditis elegans SUR-5 protein. 29 1.3
AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical ... 29 1.8
U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical pr... 28 3.1
U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical pr... 28 3.1
U42436-9|AAF99893.1| 109|Caenorhabditis elegans Hypothetical pr... 27 5.4
U55363-12|AAA97969.1| 320|Caenorhabditis elegans Hypothetical p... 27 7.1
Z77134-2|CAB00873.1| 877|Caenorhabditis elegans Hypothetical pr... 27 9.4
>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
presynaptic morphologyprotein 1 protein.
Length = 3766
Score = 30.7 bits (66), Expect = 0.58
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = -2
Query: 418 YIWEFNRRMQSVKNINKVKTTAT*ITQFKHGLSSPSSFFNRCHIWFDTPAPFFSRYHTQT 239
++ + N R+Q+ N + T+ I F LS+PS+ D P P S +
Sbjct: 2593 FLLDLNSRLQTESNSSSTATSGWTINLFPTHLSTPSTMPRSQQKRLDVP-PNNSVHQNSY 2651
Query: 238 QKLGLQTPPG 209
KLG + PG
Sbjct: 2652 MKLGYSSDPG 2661
>U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical
protein B0222.9 protein.
Length = 1217
Score = 29.5 bits (63), Expect = 1.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 156 FGGLSMNGSWIFCMCEVYPGGVCNPSF 236
FGG N SWI CMC + + P++
Sbjct: 708 FGGKVNNASWIACMCAIVAKKLNRPTY 734
>U41625-5|AAA83327.1| 700|Caenorhabditis elegans Suppressor of
activated let-60ras protein 5 protein.
Length = 700
Score = 29.5 bits (63), Expect = 1.3
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -2
Query: 202 SHIQKIQEPFIDKPPKLQNTLLLTARHSTHPTVAKERSDFVACPRLAFDCYKI 44
SH+QK+Q P KPP+ T L+ R+ K+ +D+ R D Y I
Sbjct: 38 SHVQKLQ-PVYYKPPQNLETFELSLRNHFEEKTNKKFADYREFHRFTCDNYGI 89
>AY091467-1|AAM44123.1| 700|Caenorhabditis elegans SUR-5 protein.
Length = 700
Score = 29.5 bits (63), Expect = 1.3
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -2
Query: 202 SHIQKIQEPFIDKPPKLQNTLLLTARHSTHPTVAKERSDFVACPRLAFDCYKI 44
SH+QK+Q P KPP+ T L+ R+ K+ +D+ R D Y I
Sbjct: 38 SHVQKLQ-PVYYKPPQNLETFELSLRNHFEEKTNKKFADYREFHRFTCDNYGI 89
>AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical
protein F15E6.6 protein.
Length = 1228
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 156 FGGLSMNGSWIFCMCEVYPGGVCNPSFCV 242
FGG N SWI C+C V + P++ V
Sbjct: 740 FGGKLNNASWIACICSVVAKKLNRPTYGV 768
>U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical
protein F46F11.9b protein.
Length = 1282
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 121 STHPTVAKERSDFVACPRLAFDCYKIVSARF 29
S H +A R A P L+FDCY++ F
Sbjct: 516 SFHRVLAANRFSNAAIPALSFDCYRLALPAF 546
>U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical
protein F46F11.9a protein.
Length = 1280
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 121 STHPTVAKERSDFVACPRLAFDCYKIVSARF 29
S H +A R A P L+FDCY++ F
Sbjct: 514 SFHRVLAANRFSNAAIPALSFDCYRLALPAF 544
>U42436-9|AAF99893.1| 109|Caenorhabditis elegans Hypothetical
protein C49H3.3 protein.
Length = 109
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 206 DLAHTEDPGAVH*QAAEVTEHATINSQTFHTSDSS 102
D T+ G + + EVT ATIN++T D S
Sbjct: 43 DAEKTKTDGTANEEKMEVTSQATINTKTLKKKDGS 77
>U55363-12|AAA97969.1| 320|Caenorhabditis elegans Hypothetical
protein ZC404.11 protein.
Length = 320
Score = 27.1 bits (57), Expect = 7.1
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 8/87 (9%)
Frame = +3
Query: 135 NSSVFCNFGGLSMNGSWIFCMCEVYPGGVCN---PS-----FCVCV*YRLKNGAGVSNHM 290
+ SVF + LS+ +F ++ G C PS F + + R+K G SN +
Sbjct: 154 DGSVFLDISPLSLANDCLFLKTSIFFSGSCFKILPSILMSMFSIIILIRIKAGKQRSNSL 213
Query: 291 WHRLKNDDGDDKPCLNCVIYVAVVFTL 371
H + D + V VVF +
Sbjct: 214 SHNQTDQDAQIDRSTRFIQVVVVVFVI 240
>Z77134-2|CAB00873.1| 877|Caenorhabditis elegans Hypothetical
protein R09H10.4 protein.
Length = 877
Score = 26.6 bits (56), Expect = 9.4
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = +2
Query: 338 LCNLCSCSFYLINIFYALHSTIELPNICLTRLGRLN 445
+C + C ++ N+F +T+ + +IC+ G L+
Sbjct: 691 ICMMIVCFLFMYNVFTVFVATLAITSICIGVFGFLS 726
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,511,260
Number of Sequences: 27780
Number of extensions: 217489
Number of successful extensions: 608
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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