Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13g16
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    29   0.058
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   2.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.0  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   6.7  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    22   6.7  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   6.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   6.7  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   8.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 28.7 bits (61), Expect = 0.058
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 678  PPKADXMHIQEELMYENDLLKMNI-ELMHAHINKINNMLHDLIVS 547
            PP  + +H+  EL+YE  +    + E++ A +N + N    L+V+
Sbjct: 997  PPWLEGVHVTPELIYEYQIHPKTLNEVLQADMNALKNFNQPLLVN 1041


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -2

Query: 465 LLMPCTNPPAHTSNCYNNSIYKEGRWVANTDSSQCIDFSNYKEL 334
           ++   +N   H +N YNN+ Y       N ++    +++NYK+L
Sbjct: 314 IISSLSNKTIHNNNNYNNNNYNN-----NYNNYNNNNYNNYKKL 352


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 459 MPCTNPPAHTSNCYNNSI 406
           MPCT PP+   N   N +
Sbjct: 312 MPCTQPPSAPQNLTVNFV 329


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/35 (25%), Positives = 14/35 (40%)
 Frame = +3

Query: 414 CCSNYWCVPADWCTASAKTCRPTKMLKKQNCS*DC 518
           CC         W T  ++ C  +   K++N S  C
Sbjct: 344 CCKTRIIGRRSWVTRESQICNNSSSDKERNSSFKC 378


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 1   YDTFLLLHLILSTITVS 51
           Y   LLLH++ +TIT++
Sbjct: 124 YGVALLLHMLTTTITLT 140


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 252 WSFIAQQKSNLITTMENTKFGGVGTSLND 166
           WS+++ +K+N + T+     G   T LN+
Sbjct: 286 WSYMSGEKANEVATILVDDCGCNSTMLNE 314


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 252 WSFIAQQKSNLITTMENTKFGGVGTSLND 166
           WS+++ +K+N + T+     G   T LN+
Sbjct: 286 WSYMSGEKANEVATILVDDCGCNSTMLNE 314


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 127 QFGGQFAFSHGSDVVQTGADAAKLGVLHGGYEIAFLL 237
           QFG  +   +GS ++ T   + K  ++   +EI+ +L
Sbjct: 192 QFGVVYENKNGSVILDTARCSMKWTLIEHAFEISTML 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,752
Number of Sequences: 438
Number of extensions: 4400
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)