Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13g13
(786 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BX537971-1|CAD97935.1| 150|Homo sapiens hypothetical protein pr... 118 3e-26
BC032300-1|AAH32300.1| 135|Homo sapiens CDGSH iron sulfur domai... 118 3e-26
BC059168-1|AAH59168.1| 108|Homo sapiens CDGSH iron sulfur domai... 96 1e-19
BC008474-1|AAH08474.1| 108|Homo sapiens zinc finger, CDGSH-type... 96 1e-19
BC007043-1|AAH07043.1| 108|Homo sapiens zinc finger, CDGSH-type... 96 1e-19
BC005962-1|AAH05962.1| 108|Homo sapiens zinc finger, CDGSH-type... 96 1e-19
AY960578-1|AAY32336.1| 108|Homo sapiens zinc finger CDGSH-type ... 96 1e-19
AF220049-1|AAF67642.1| 108|Homo sapiens uncharacterized hematop... 96 1e-19
BC014558-1|AAH14558.1| 627|Homo sapiens fem-1 homolog b (C. ele... 34 0.67
BC010122-1|AAH10122.1| 627|Homo sapiens fem-1 homolog b (C. ele... 34 0.67
AF204883-1|AAF69303.1| 627|Homo sapiens FEM1 beta protein. 34 0.67
AF178632-1|AAF05314.1| 627|Homo sapiens FEM-1-like death recept... 34 0.67
AB007856-1|BAA23692.2| 627|Homo sapiens KIAA0396 protein. 34 0.67
S66431-1|AAB28544.1| 1722|Homo sapiens retinoblastoma binding pr... 31 4.7
>BX537971-1|CAD97935.1| 150|Homo sapiens hypothetical protein
protein.
Length = 150
Score = 118 bits (283), Expect = 3e-26
Identities = 56/128 (43%), Positives = 84/128 (65%), Gaps = 2/128 (1%)
Frame = -3
Query: 775 VSNLXKVTIPNYLSSLPIPDSVGGWFRLGVKDWLALIPPTVVVGGISYYSYQT-IKKARE 599
V+ + KV +P YL LP+P+S+ G+ RL V +WL L+P V+ + Y + + + K ++
Sbjct: 21 VARIVKVQLPAYLKRLPVPESITGFARLTVSEWLRLLPFLGVLALLGYLAVRPFLPKKKQ 80
Query: 598 AGSGQINPCIRKDINKVVDFIDIEDIT-EKASLCRCWRSKNWPYCDGSHGPHNKETGDNT 422
IN I+K+ KVV+ I+IED+ KA+ CRCWRSK +P CDGSH HN+ TGDN
Sbjct: 81 QKDSLINLKIQKENPKVVNEINIEDLCLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNV 140
Query: 421 GPVVVRHK 398
GP++++ K
Sbjct: 141 GPLILKKK 148
>BC032300-1|AAH32300.1| 135|Homo sapiens CDGSH iron sulfur domain 2
protein.
Length = 135
Score = 118 bits (283), Expect = 3e-26
Identities = 56/128 (43%), Positives = 84/128 (65%), Gaps = 2/128 (1%)
Frame = -3
Query: 775 VSNLXKVTIPNYLSSLPIPDSVGGWFRLGVKDWLALIPPTVVVGGISYYSYQT-IKKARE 599
V+ + KV +P YL LP+P+S+ G+ RL V +WL L+P V+ + Y + + + K ++
Sbjct: 6 VARIVKVQLPAYLKRLPVPESITGFARLTVSEWLRLLPFLGVLALLGYLAVRPFLPKKKQ 65
Query: 598 AGSGQINPCIRKDINKVVDFIDIEDIT-EKASLCRCWRSKNWPYCDGSHGPHNKETGDNT 422
IN I+K+ KVV+ I+IED+ KA+ CRCWRSK +P CDGSH HN+ TGDN
Sbjct: 66 QKDSLINLKIQKENPKVVNEINIEDLCLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNV 125
Query: 421 GPVVVRHK 398
GP++++ K
Sbjct: 126 GPLILKKK 133
>BC059168-1|AAH59168.1| 108|Homo sapiens CDGSH iron sulfur domain 1
protein.
Length = 108
Score = 96.3 bits (229), Expect = 1e-19
Identities = 39/95 (41%), Positives = 57/95 (60%)
Frame = -3
Query: 682 DWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASL 503
+W+A + I Y +Y+ IN I+KD K+V D+ED+ +KA
Sbjct: 12 EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVY 71
Query: 502 CRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 398
CRCWRSK +P+CDG+H HN+ETGDN GP++++ K
Sbjct: 72 CRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106
>BC008474-1|AAH08474.1| 108|Homo sapiens zinc finger, CDGSH-type
domain 1 protein.
Length = 108
Score = 96.3 bits (229), Expect = 1e-19
Identities = 39/95 (41%), Positives = 57/95 (60%)
Frame = -3
Query: 682 DWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASL 503
+W+A + I Y +Y+ IN I+KD K+V D+ED+ +KA
Sbjct: 12 EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVY 71
Query: 502 CRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 398
CRCWRSK +P+CDG+H HN+ETGDN GP++++ K
Sbjct: 72 CRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106
>BC007043-1|AAH07043.1| 108|Homo sapiens zinc finger, CDGSH-type
domain 1 protein.
Length = 108
Score = 96.3 bits (229), Expect = 1e-19
Identities = 39/95 (41%), Positives = 57/95 (60%)
Frame = -3
Query: 682 DWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASL 503
+W+A + I Y +Y+ IN I+KD K+V D+ED+ +KA
Sbjct: 12 EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVY 71
Query: 502 CRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 398
CRCWRSK +P+CDG+H HN+ETGDN GP++++ K
Sbjct: 72 CRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106
>BC005962-1|AAH05962.1| 108|Homo sapiens zinc finger, CDGSH-type
domain 1 protein.
Length = 108
Score = 96.3 bits (229), Expect = 1e-19
Identities = 39/95 (41%), Positives = 57/95 (60%)
Frame = -3
Query: 682 DWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASL 503
+W+A + I Y +Y+ IN I+KD K+V D+ED+ +KA
Sbjct: 12 EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVY 71
Query: 502 CRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 398
CRCWRSK +P+CDG+H HN+ETGDN GP++++ K
Sbjct: 72 CRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106
>AY960578-1|AAY32336.1| 108|Homo sapiens zinc finger CDGSH-type
domain 1 protein.
Length = 108
Score = 96.3 bits (229), Expect = 1e-19
Identities = 39/95 (41%), Positives = 57/95 (60%)
Frame = -3
Query: 682 DWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASL 503
+W+A + I Y +Y+ IN I+KD K+V D+ED+ +KA
Sbjct: 12 EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVY 71
Query: 502 CRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 398
CRCWRSK +P+CDG+H HN+ETGDN GP++++ K
Sbjct: 72 CRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106
>AF220049-1|AAF67642.1| 108|Homo sapiens uncharacterized
hematopoietic stem/progenitor cells protein MDS029
protein.
Length = 108
Score = 96.3 bits (229), Expect = 1e-19
Identities = 39/95 (41%), Positives = 57/95 (60%)
Frame = -3
Query: 682 DWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASL 503
+W+A + I Y +Y+ IN I+KD K+V D+ED+ +KA
Sbjct: 12 EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVY 71
Query: 502 CRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 398
CRCWRSK +P+CDG+H HN+ETGDN GP++++ K
Sbjct: 72 CRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106
>BC014558-1|AAH14558.1| 627|Homo sapiens fem-1 homolog b (C.
elegans) protein.
Length = 627
Score = 33.9 bits (74), Expect = 0.67
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 319 IKQCNNSFLHNFFENYTCYLFVFSWLVCV 405
+K +++ +HN +NY C L+ F +LVC+
Sbjct: 425 VKNISDADVHNAMDNYECNLYTFLYLVCI 453
>BC010122-1|AAH10122.1| 627|Homo sapiens fem-1 homolog b (C.
elegans) protein.
Length = 627
Score = 33.9 bits (74), Expect = 0.67
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 319 IKQCNNSFLHNFFENYTCYLFVFSWLVCV 405
+K +++ +HN +NY C L+ F +LVC+
Sbjct: 425 VKNISDADVHNAMDNYECNLYTFLYLVCI 453
>AF204883-1|AAF69303.1| 627|Homo sapiens FEM1 beta protein.
Length = 627
Score = 33.9 bits (74), Expect = 0.67
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 319 IKQCNNSFLHNFFENYTCYLFVFSWLVCV 405
+K +++ +HN +NY C L+ F +LVC+
Sbjct: 425 VKNISDADVHNAMDNYECNLYTFLYLVCI 453
>AF178632-1|AAF05314.1| 627|Homo sapiens FEM-1-like death receptor
binding protein protein.
Length = 627
Score = 33.9 bits (74), Expect = 0.67
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 319 IKQCNNSFLHNFFENYTCYLFVFSWLVCV 405
+K +++ +HN +NY C L+ F +LVC+
Sbjct: 425 VKNISDADVHNAMDNYECNLYTFLYLVCI 453
>AB007856-1|BAA23692.2| 627|Homo sapiens KIAA0396 protein.
Length = 627
Score = 33.9 bits (74), Expect = 0.67
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 319 IKQCNNSFLHNFFENYTCYLFVFSWLVCV 405
+K +++ +HN +NY C L+ F +LVC+
Sbjct: 425 VKNISDADVHNAMDNYECNLYTFLYLVCI 453
>S66431-1|AAB28544.1| 1722|Homo sapiens retinoblastoma binding protein
2 protein.
Length = 1722
Score = 31.1 bits (67), Expect = 4.7
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 577 PCIRKDINKVVDFIDIEDITEKASLCRCWRSK-NWPYCDG 461
PC K + V +I++I+ K+ LC C+ K +W CDG
Sbjct: 1623 PCKDKGVVFVTKKREIKNISFKSVLCDCFSKKVDWVQCDG 1662
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,615,210
Number of Sequences: 237096
Number of extensions: 2172232
Number of successful extensions: 3876
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3872
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9590293096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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