Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13g11
(812 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49967-5|CAA90251.1| 293|Caenorhabditis elegans Hypothetical pr... 301 3e-82
U46753-2|AAA85760.1| 894|Caenorhabditis elegans Hypothetical pr... 34 0.11
AF067610-1|AAC17538.2| 696|Caenorhabditis elegans Hypothetical ... 31 0.74
Z81109-17|CAB03241.2| 497|Caenorhabditis elegans Hypothetical p... 31 0.98
Z77136-8|CAB00885.2| 278|Caenorhabditis elegans Hypothetical pr... 31 1.3
U53332-1|AAK31529.2| 580|Caenorhabditis elegans Hypothetical pr... 30 1.7
DQ178637-1|ABD75716.1| 580|Caenorhabditis elegans F59G1.4 protein. 30 1.7
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 30 2.3
L07144-6|AAK21443.1| 834|Caenorhabditis elegans Temporarily ass... 29 3.0
L07144-5|AAU20841.1| 837|Caenorhabditis elegans Temporarily ass... 29 3.0
Z48783-4|CAA88698.1| 359|Caenorhabditis elegans Hypothetical pr... 29 4.0
AL031629-3|CAA20976.1| 555|Caenorhabditis elegans Hypothetical ... 29 4.0
Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical pr... 29 5.2
AL110471-2|CAB63306.1| 479|Caenorhabditis elegans Hypothetical ... 29 5.2
AF078790-14|AAC26930.1| 335|Caenorhabditis elegans Hypothetical... 29 5.2
AF000299-1|AAC47980.1| 210|Caenorhabditis elegans Hypothetical ... 29 5.2
Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical pr... 28 6.9
AF043692-2|AAB97531.1| 253|Caenorhabditis elegans Hypothetical ... 28 6.9
Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical pr... 28 9.1
Z93390-1|CAE46674.1| 540|Caenorhabditis elegans Hypothetical pr... 28 9.1
Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical pr... 28 9.1
U97006-5|AAC47967.1| 222|Caenorhabditis elegans Hypothetical pr... 28 9.1
AL110500-21|CAI79283.1| 197|Caenorhabditis elegans Hypothetical... 28 9.1
AL032636-4|CAA21606.1| 123|Caenorhabditis elegans Hypothetical ... 28 9.1
AF125951-3|AAY86273.1| 244|Caenorhabditis elegans Hypothetical ... 28 9.1
>Z49967-5|CAA90251.1| 293|Caenorhabditis elegans Hypothetical
protein F54C9.5 protein.
Length = 293
Score = 301 bits (740), Expect = 3e-82
Identities = 149/268 (55%), Positives = 185/268 (69%), Gaps = 1/268 (0%)
Frame = -2
Query: 811 KGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELP 632
+GKTDYYARKRL VQDKNKYNTPKYRLIVR++NKDV Q+AYS+IEGD +V +AYSHELP
Sbjct: 25 EGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDVVAQLAYSKIEGDVVVASAYSHELP 84
Query: 631 RYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXDEYNVEPV-DNGPGAFR 455
RYG+KVGLTNYAAAY+TG ++YNVE D P F+
Sbjct: 85 RYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYKGHEELTGEDYNVEEEGDRAP--FK 142
Query: 454 CYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLH 275
LD+GLARTTTG+++F MKG DGG+NVPHS RF G+D ESK++NAE HR I G H
Sbjct: 143 AVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESKEYNAEAHRDRILGKH 202
Query: 274 VAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSV 95
VA+YM L+++DED +KRQFSK++ G+ AD + A Y+K H AIRAD S K+ K S
Sbjct: 203 VADYMTYLKEEDEDRYKRQFSKFLAAGLNADNLVATYQKVHSAIRADASPAAKKAAKPS- 261
Query: 94 KQKRWNKRKLTLAERKNRIKQKKASFIK 11
KR ++LT ERK R+ KKA ++
Sbjct: 262 --KRHTAKRLTYDERKQRVADKKALLLQ 287
>U46753-2|AAA85760.1| 894|Caenorhabditis elegans Hypothetical protein
C34F11.5 protein.
Length = 894
Score = 34.3 bits (75), Expect = 0.11
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = -2
Query: 232 SFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADP--SHKKKELKKDSVKQKRWNKRKLTL 59
+ K++ K +K + EA K+ + IR S KKE +K+ K+K K K
Sbjct: 815 TLKKKMRKKVKQQMLKKMEEAAAKENEKEIRKTKKKSKDKKEGRKEESKEKAHKKSKPKK 874
Query: 58 AERKNRIKQKKASFIKR 8
+ R+ + QKKA K+
Sbjct: 875 SNRRGHMNQKKAKRTKK 891
>AF067610-1|AAC17538.2| 696|Caenorhabditis elegans Hypothetical
protein F41A4.1 protein.
Length = 696
Score = 31.5 bits (68), Expect = 0.74
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -2
Query: 493 NVEPVDNGPGAFRCYL-DVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKK 317
N EP++ G F C+L TT+G+R G + L + ++FPG +
Sbjct: 68 NAEPIEKKNGGFNCHLHSKSPVLTTSGSRTVGTKTCLENKCLKRSFAFEKFPGRSLVNSS 127
Query: 316 F 314
F
Sbjct: 128 F 128
>Z81109-17|CAB03241.2| 497|Caenorhabditis elegans Hypothetical
protein R10D12.10 protein.
Length = 497
Score = 31.1 bits (67), Expect = 0.98
Identities = 21/57 (36%), Positives = 27/57 (47%)
Frame = -2
Query: 181 AIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIK 11
A E + KK E R K+KE +KD K+K K K + K R K+K IK
Sbjct: 354 AEEKVVKKNKEKEREKEKDKEKEKEKDKEKEKEKEKEK-EKDKEKEREKRKSKEKIK 409
>Z77136-8|CAB00885.2| 278|Caenorhabditis elegans Hypothetical
protein ZC376.8 protein.
Length = 278
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = -2
Query: 187 ADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKR--KLTLAERKNRIKQKKASFI 14
ADA++ I +K E +P+ KK KK+ K + K K E+ N+ + KK+
Sbjct: 71 ADAVKKIEEKGEEKKPEEPAKSKKSEKKEKSKNEGSKKEEDKEKEKEKSNKAEDKKSEDP 130
Query: 13 KR 8
K+
Sbjct: 131 KK 132
>U53332-1|AAK31529.2| 580|Caenorhabditis elegans Hypothetical
protein F59G1.4 protein.
Length = 580
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = -2
Query: 205 IKLGVTADAIEAIYKKAHEAI---RADPSHKKKELKKDSVKQKRWNKRKLTLAERK 47
I +G++ A+E YKKA + I + D +KKK+ K+ K+K R + L RK
Sbjct: 422 INIGLSDGAVE--YKKAQDEITRKKEDEENKKKKEKEKVEKEKMKALRHIQLTSRK 475
>DQ178637-1|ABD75716.1| 580|Caenorhabditis elegans F59G1.4 protein.
Length = 580
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = -2
Query: 205 IKLGVTADAIEAIYKKAHEAI---RADPSHKKKELKKDSVKQKRWNKRKLTLAERK 47
I +G++ A+E YKKA + I + D +KKK+ K+ K+K R + L RK
Sbjct: 422 INIGLSDGAVE--YKKAQDEITRKKEDEENKKKKEKEKVEKEKMKALRHIQLTSRK 475
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
F25H8.3 protein.
Length = 2165
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 649 KQRTQYGHLQSESRPPGMLHLCWRDAQSDDI*VCYI-CS 762
+QR ++ + + P HLC R+++ DI CYI CS
Sbjct: 980 RQRVSCVKMEGDRQTPASEHLCDRNSKPSDIASCYIDCS 1018
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 649 KQRTQYGHLQSESRPPGMLHLCWRDAQSDDI*VCYI-CS 762
+QR ++ + + P HLC R+++ DI CYI CS
Sbjct: 980 RQRVSCVKMEGDRQTPASEHLCDRNSKPSDIASCYIDCS 1018
>L07144-6|AAK21443.1| 834|Caenorhabditis elegans Temporarily
assigned gene nameprotein 84, isoform a protein.
Length = 834
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = -2
Query: 187 ADAIEAIYKKAH--EAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFI 14
+D + YK +H E +R + K+E K +VKQ W++ K TL ++ + K+ I
Sbjct: 421 SDIHNSFYKVSHDSEVLRCEFETVKEEYNK-TVKQSEWDEMKATLNTLRSMNRSLKSEKI 479
Query: 13 K 11
+
Sbjct: 480 R 480
>L07144-5|AAU20841.1| 837|Caenorhabditis elegans Temporarily
assigned gene nameprotein 84, isoform b protein.
Length = 837
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = -2
Query: 187 ADAIEAIYKKAH--EAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFI 14
+D + YK +H E +R + K+E K +VKQ W++ K TL ++ + K+ I
Sbjct: 421 SDIHNSFYKVSHDSEVLRCEFETVKEEYNK-TVKQSEWDEMKATLNTLRSMNRSLKSEKI 479
Query: 13 K 11
+
Sbjct: 480 R 480
>Z48783-4|CAA88698.1| 359|Caenorhabditis elegans Hypothetical
protein F33H1.3 protein.
Length = 359
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = -2
Query: 241 DEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLT 62
D ++ +KY L T + A+ ++ + P H KK V NKR++T
Sbjct: 35 DRQQIRQAMAKYCNLDETTSKLLALERQIL-GLDPQPFHIDVLRKKQKVLTDSINKRRMT 93
Query: 61 LAERKNRIKQKK 26
L + K + KK
Sbjct: 94 LQQGKEDAELKK 105
>AL031629-3|CAA20976.1| 555|Caenorhabditis elegans Hypothetical
protein Y106G6D.3 protein.
Length = 555
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/41 (29%), Positives = 27/41 (65%)
Frame = -2
Query: 130 SHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKR 8
S +KK+L+K+ ++ + +KRK +ER+ + + K+ + K+
Sbjct: 70 SRRKKKLRKEKSRKSQRSKRKKRESERRKKERSKRIARSKK 110
>Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical
protein R05D11.4 protein.
Length = 581
Score = 28.7 bits (61), Expect = 5.2
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 3/109 (2%)
Frame = -2
Query: 361 HSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEY---MRSLEQDDEDSFKRQFSKYIKLGV 191
H++ F D + K A V R G V EY M+ + +D + + K K+ +
Sbjct: 474 HAVTYFTDADMKYIKSIATVIRQS--GFDVPEYLMEMKKVSRDRKKDMLKHAPKRHKIAI 531
Query: 190 TADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKN 44
+ + K +A + + K E + +K+ K+KL KN
Sbjct: 532 VKEQVIKKKKMLAKAAAEEKAKNKTETQTAEKPEKKIKKKKLIKKNNKN 580
>AL110471-2|CAB63306.1| 479|Caenorhabditis elegans Hypothetical
protein T06D10.2 protein.
Length = 479
Score = 28.7 bits (61), Expect = 5.2
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Frame = -2
Query: 259 RSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRW 80
+ LE+D + KR+ ++ K D E + K R +KKE K+ ++K+
Sbjct: 142 KKLEEDKKKEEKRKEAEEKK---KKDEEEKMKKDEERNKRKKEEEEKKEAKRREDEEKKE 198
Query: 79 NKRK--LTLAERKNRIKQKKASFIKRLQ 2
KRK + ERK R A F +++
Sbjct: 199 AKRKEEEAIEERKRRQSALFAKFFSKVE 226
>AF078790-14|AAC26930.1| 335|Caenorhabditis elegans Hypothetical
protein F36H12.3 protein.
Length = 335
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -2
Query: 136 DPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 26
D +KKE KKD ++K+ K++ E+K K++K
Sbjct: 160 DKDDEKKEEKKDDKEEKKEEKKEEKKEEKKEEKKEEK 196
>AF000299-1|AAC47980.1| 210|Caenorhabditis elegans Hypothetical
protein E03H12.5 protein.
Length = 210
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = -2
Query: 163 KKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 26
+K E + D +KK+ KKD K+K +K + +++ + K++K
Sbjct: 124 EKKDEEKKDDKKDEKKDEKKDEKKEKSKKSKKSSKSKKSKKSKREK 169
>Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical
protein K10G4.5 protein.
Length = 1251
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -2
Query: 754 YNTPKYRLIVRLSNKDVTCQVAYSRIEGDHI---VCAAYSHEL 635
YN P+YR +++L K C+ + GD++ +CA + EL
Sbjct: 548 YNDPEYRNVMKLKIKSPICE--QCEVTGDNLPFGICAEHETEL 588
>AF043692-2|AAB97531.1| 253|Caenorhabditis elegans Hypothetical
protein C17F3.3 protein.
Length = 253
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/81 (24%), Positives = 37/81 (45%)
Frame = -2
Query: 268 EYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQ 89
E + E+ +D K+ K K + + I K + +++ KK E K+D K+
Sbjct: 71 EEKKEEEKKADDEKKKTEEKDDKKSKKTEEKDKISVKKTQETKSERKDKKDEKKEDEKKE 130
Query: 88 KRWNKRKLTLAERKNRIKQKK 26
+ K K ++K+ +K KK
Sbjct: 131 ESKEKSK-DEEKKKDEVKDKK 150
>Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 607 SDQPSHHNVATHVNKQRTQYGHLQSESRP 693
SD P HH +H + Q Q HLQ P
Sbjct: 17 SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45
>Z93390-1|CAE46674.1| 540|Caenorhabditis elegans Hypothetical
protein T23B5.3b protein.
Length = 540
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 607 SDQPSHHNVATHVNKQRTQYGHLQSESRP 693
SD P HH +H + Q Q HLQ P
Sbjct: 17 SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45
>Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 607 SDQPSHHNVATHVNKQRTQYGHLQSESRP 693
SD P HH +H + Q Q HLQ P
Sbjct: 17 SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45
>U97006-5|AAC47967.1| 222|Caenorhabditis elegans Hypothetical
protein C13F10.7 protein.
Length = 222
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -2
Query: 124 KKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 26
K+K+LKK + K+K+ +KL ERK K+K+
Sbjct: 131 KEKKLKKKAKKEKK-KAKKLEKKERKKERKEKR 162
>AL110500-21|CAI79283.1| 197|Caenorhabditis elegans Hypothetical
protein Y87G2A.20 protein.
Length = 197
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Frame = -2
Query: 163 KKAHEAIRADPSHKKKELKKDSVKQKR--WNKRKLTLAERK-NRIKQKKAS 20
KK E +AD + KK+ KKD+ K+K+ +K+K A++K + KQ+ AS
Sbjct: 53 KKRKERKKADKA--KKKTKKDAAKRKKKSKDKKKKQKAQKKAEKPKQQPAS 101
>AL032636-4|CAA21606.1| 123|Caenorhabditis elegans Hypothetical
protein Y40B1B.7 protein.
Length = 123
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/77 (20%), Positives = 38/77 (49%)
Frame = -2
Query: 232 SFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAE 53
+ K + K ++L D ++ + E + +KKE K + K++ N+RK + +
Sbjct: 36 TLKSTWDKKMELKAKKDMVKRVQDNIREK-QVQERQEKKERKVEQEKRRLENERKAEIVQ 94
Query: 52 RKNRIKQKKASFIKRLQ 2
+ +I + K + ++L+
Sbjct: 95 KITKIHKLKKTKKRQLR 111
>AF125951-3|AAY86273.1| 244|Caenorhabditis elegans Hypothetical
protein D2063.4 protein.
Length = 244
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/55 (25%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Frame = +2
Query: 164 VDGFNSICSDS*FYVLAELSLERILIILFK--TSHVFSNMQTKDVSPVYFSIELF 322
VDGF ++CS S V + L ++++ +L + +HV ++ ++++ + IE++
Sbjct: 53 VDGFRNVCSGSDLSVRSNLDVKQLSELLKEDPCTHVAGDVVIENLTDIAIPIEVY 107
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,953,129
Number of Sequences: 27780
Number of extensions: 379270
Number of successful extensions: 1442
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1413
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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