Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13g09
(302 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 29 0.15
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 26 1.4
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 26 1.4
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 26 1.4
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual 25 2.4
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 3.2
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 24 4.3
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 24 5.6
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 23 7.5
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 23 7.5
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 23 9.9
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 23 9.9
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 29.1 bits (62), Expect = 0.15
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +1
Query: 121 TNRNLFYKSIEDLIFKFRYKDAENHLIFALTYHPKDYKFNELLKYVQQLSVNQQRTES 294
T+ +Y+S + L+ RY +A+ + HP D L K +Q+ S + ++ ES
Sbjct: 134 THAKAYYRSAKALVALKRYDEAKECIRLCSLVHPNDPAILALSKELQKKSDDFEKRES 191
>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 25.8 bits (54), Expect = 1.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 76 LDSPAIGLQKQPLFETNRNLFYKSIEDLIFK 168
+DS +G ++E RNLFYK + + + K
Sbjct: 248 IDSGQVGGCAIDVYEGERNLFYKDLSNEVIK 278
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 25.8 bits (54), Expect = 1.4
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = +1
Query: 4 NGISTKARLLLQDLASRVVLSENPLDSPAIGLQKQPLFETNRNLFYKSIEDLIFKFRYKD 183
+GIST RLL A + LS P + + P ET+ F K I +L+ + D
Sbjct: 797 SGISTVRRLLSLVEAGNISLSSFPKSETLLAVLLAPTTETS---FLKEISNLLDRTGDSD 853
Query: 184 A 186
A
Sbjct: 854 A 854
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 1.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 98 KPMAGLSNGFSLNTTRLAKSCSSNLAFVD 12
KP G+ S +TT+ AKS SS + +D
Sbjct: 76 KPSVGIEKNPSFSTTKSAKSFSSTSSNID 104
>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 723
Score = 25.0 bits (52), Expect = 2.4
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = -2
Query: 124 WFQTRVVFANRWLDYLMDFRSTPHDLPNL 38
+F+ R++FAN DY++ F ++ ++ +L
Sbjct: 423 FFEKRILFANTTNDYIVPFGTSAMEVSSL 451
>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 608
Score = 24.6 bits (51), Expect = 3.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 67 ENPLDSPAIGLQKQPLFETNR 129
E P D P+IG + PLFE+ R
Sbjct: 451 EPPNDEPSIGNELLPLFESLR 471
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 24.2 bits (50), Expect = 4.3
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = +1
Query: 178 KDAENHLIFALTYHPKDYKFNELLKYVQQLSVNQ 279
+D ++L+ L++H + +FN +Y + +S+ Q
Sbjct: 109 RDYVDYLLDKLSFHAQHPEFNGTFEYKEYISLRQ 142
>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 330
Score = 23.8 bits (49), Expect = 5.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 101 CKPMAGLSNGFSLNTTRLAKSCSSNLA 21
C P+A L+ G SLN + C + A
Sbjct: 140 CTPLANLAVGLSLNIQEVLIDCFATAA 166
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 23.4 bits (48), Expect = 7.5
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +1
Query: 10 ISTKARLLLQDLASRVVLSENPLDSPAIGLQKQPLFETNRNLFYKSIEDLIFKFRY 177
++ + RLLL L VL+ + + A G PL+ T ++ I+D +F +++
Sbjct: 732 LNQEERLLL--LKRGDVLTFDTEELEAYGKTLYPLYITKEDIVCLEIDDRVFHYKF 785
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 23.4 bits (48), Expect = 7.5
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +1
Query: 97 LQKQPLFETNRNLFYKSIEDLIFKFRYKDAENHLIFA 207
L K + NRNL +K + + F Y+ +FA
Sbjct: 613 LSKLYVVPFNRNLLFKRLMGIRFVIHYRSLATAFLFA 649
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 23.0 bits (47), Expect = 9.9
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 113 CLKPIETYFTNLLRI 157
C+ P E YF LLRI
Sbjct: 758 CVDPKEPYFNTLLRI 772
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 23.0 bits (47), Expect = 9.9
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -1
Query: 269 DNCCTYFNNSLNL*SLGWYVRAKIK*FSASLYL 171
+N ++F+NSLN S+ ++++ IK + S YL
Sbjct: 226 NNGTSFFSNSLNRDSIVEFLQSSIKDNNFSEYL 258
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,166,330
Number of Sequences: 5004
Number of extensions: 21303
Number of successful extensions: 55
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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