Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13g09
(302 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0832 - 28037047-28037315,28037428-28037530,28037664-280376... 27 2.1
08_02_0002 + 11173365-11173512,11173528-11178470 27 3.7
11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,952... 26 4.9
10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301 26 4.9
08_02_0010 - 11230407-11232416 26 4.9
08_02_0009 + 11216532-11218687,11220727-11225998 26 4.9
08_02_0006 + 11204835-11206382 26 4.9
08_02_0003 + 11180421-11180757,11180773-11185715 26 4.9
08_01_1086 - 11150017-11151564 26 4.9
02_02_0537 + 11308195-11309667 26 4.9
05_03_0419 - 13707843-13707860,13707936-13708010,13708251-137082... 26 6.5
01_05_0645 - 23899579-23904483 25 8.6
>03_05_0832 -
28037047-28037315,28037428-28037530,28037664-28037695,
28037788-28038005,28038145-28038260,28038514-28038757,
28039129-28039216,28039513-28039588,28040126-28040164,
28040347-28040405,28041292-28041529
Length = 493
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 55 VVLSENPLDSPAIGLQKQPLFETNRNLFYKS 147
VV++EN +D PA + Q L +T R FY+S
Sbjct: 399 VVITENGMDQPANLSRDQYLRDTTRVHFYRS 429
>08_02_0002 + 11173365-11173512,11173528-11178470
Length = 1696
Score = 26.6 bits (56), Expect = 3.7
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +1
Query: 37 QDLASRVVLSENPLDSPAIGLQKQPLFETNRNL--FYKSIEDLIFKFRYKDAENHLIFAL 210
+D + + S+NP+ + LQ + F+T + L F + I DLI++ ++K+ + + L
Sbjct: 1382 KDSCKKKLKSQNPMSTTYENLQPRLSFKTEQTLSCFGQDILDLIWQ-KFKERQMKIFLGL 1440
Query: 211 TYHPKDYKFNEL 246
+DY F+ L
Sbjct: 1441 ----QDYFFDLL 1448
>11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,
9527440-9527767
Length = 1505
Score = 26.2 bits (55), Expect = 4.9
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +1
Query: 37 QDLASRVVLSENPLDSPAIGLQKQPLFETNRNL--FYKSIEDLIFKFRYKDAENHLIFAL 210
+D + + S+NP+ + LQ + F+T + L F + I DL+++ ++K+ + + L
Sbjct: 1191 KDSCKKKLKSQNPMSTTYENLQPRLSFKTEQTLSCFGQDILDLVWQ-KFKERQMKIFLGL 1249
Query: 211 TYHPKDYKFNEL 246
+DY F+ L
Sbjct: 1250 ----QDYFFDLL 1257
>10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301
Length = 1116
Score = 26.2 bits (55), Expect = 4.9
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +1
Query: 37 QDLASRVVLSENPLDSPAIGLQKQPLFETNRNL--FYKSIEDLIFKFRYKDAENHLIFAL 210
+D + + S+NP+ + LQ + F+T + L F + I DL+++ ++K+ + + L
Sbjct: 802 KDSCKKKLKSQNPMSTTYENLQPRLSFKTEQTLSCFGQDILDLVWQ-KFKERQMKIFLGL 860
Query: 211 TYHPKDYKFNEL 246
+DY F+ L
Sbjct: 861 ----QDYFFDLL 868
>08_02_0010 - 11230407-11232416
Length = 669
Score = 26.2 bits (55), Expect = 4.9
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +1
Query: 37 QDLASRVVLSENPLDSPAIGLQKQPLFETNRNL--FYKSIEDLIFKFRYKDAENHLIFAL 210
+D + + S+NP+ + LQ + F+T + L F + I DL+++ ++K+ + + L
Sbjct: 355 KDSCKKKLKSQNPMSTTYENLQPRLSFKTEQTLSCFGQDILDLVWQ-KFKERQMKIFLGL 413
Query: 211 TYHPKDYKFNEL 246
+DY F+ L
Sbjct: 414 ----QDYFFDLL 421
>08_02_0009 + 11216532-11218687,11220727-11225998
Length = 2475
Score = 26.2 bits (55), Expect = 4.9
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +1
Query: 37 QDLASRVVLSENPLDSPAIGLQKQPLFETNRNL--FYKSIEDLIFKFRYKDAENHLIFAL 210
+D + + S+NP+ + LQ + F+T + L F + I DL+++ ++K+ + + L
Sbjct: 2161 KDSCKKKLKSQNPMSTTYENLQPRLSFKTEQTLSCFGQDILDLVWQ-KFKERQMKIFLGL 2219
Query: 211 TYHPKDYKFNEL 246
+DY F+ L
Sbjct: 2220 ----QDYFFDLL 2227
>08_02_0006 + 11204835-11206382
Length = 515
Score = 26.2 bits (55), Expect = 4.9
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +1
Query: 37 QDLASRVVLSENPLDSPAIGLQKQPLFETNRNL--FYKSIEDLIFKFRYKDAENHLIFAL 210
+D + + S+NP+ + LQ + F+T + L F + I DL+++ ++K+ + + L
Sbjct: 201 KDSCKKKLKSQNPMSTTYENLQPRLSFKTEQTLSCFGQDILDLVWQ-KFKERQMKIFLGL 259
Query: 211 TYHPKDYKFNEL 246
+DY F+ L
Sbjct: 260 ----QDYFFDLL 267
>08_02_0003 + 11180421-11180757,11180773-11185715
Length = 1759
Score = 26.2 bits (55), Expect = 4.9
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +1
Query: 37 QDLASRVVLSENPLDSPAIGLQKQPLFETNRNL--FYKSIEDLIFKFRYKDAENHLIFAL 210
+D + + S+NP+ + LQ + F+T + L F + I DL+++ ++K+ + + L
Sbjct: 1445 KDSCKKKLKSQNPMSTTYENLQPRLSFKTEQTLSCFGQDILDLVWQ-KFKERQMKIFLGL 1503
Query: 211 TYHPKDYKFNEL 246
+DY F+ L
Sbjct: 1504 ----QDYFFDLL 1511
>08_01_1086 - 11150017-11151564
Length = 515
Score = 26.2 bits (55), Expect = 4.9
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +1
Query: 37 QDLASRVVLSENPLDSPAIGLQKQPLFETNRNL--FYKSIEDLIFKFRYKDAENHLIFAL 210
+D + + S+NP+ + LQ + F+T + L F + I DL+++ ++K+ + + L
Sbjct: 201 KDSCKKKLKSQNPMSTTYENLQPRLSFKTEQTLSCFGQDILDLVWQ-KFKERQMKIFLGL 259
Query: 211 TYHPKDYKFNEL 246
+DY F+ L
Sbjct: 260 ----QDYFFDLL 267
>02_02_0537 + 11308195-11309667
Length = 490
Score = 26.2 bits (55), Expect = 4.9
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +1
Query: 37 QDLASRVVLSENPLDSPAIGLQKQPLFETNRNL--FYKSIEDLIFKFRYKDAENHLIFAL 210
+D + + S+NP+ + LQ + F+T + L F + I DL+++ ++K+ + + L
Sbjct: 201 KDSCQKKLKSQNPMSTTYENLQPRLSFKTEQTLSCFGQDILDLVWQ-KFKERQMKIFLGL 259
Query: 211 TYHPKDYKFNEL 246
+DY F+ L
Sbjct: 260 ----QDYFFDLL 267
>05_03_0419 -
13707843-13707860,13707936-13708010,13708251-13708286,
13709718-13709765,13710246-13710326,13710503-13710554,
13710671-13710730,13711266-13711346,13711461-13711577,
13711714-13711754,13711981-13712059,13712136-13712292,
13712586-13712718,13712799-13712926,13715152-13715314
Length = 422
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/45 (26%), Positives = 27/45 (60%)
Frame = +1
Query: 166 KFRYKDAENHLIFALTYHPKDYKFNELLKYVQQLSVNQQRTESNA 300
+F+ K+A+N +TY P+D++ L++ ++ S ++ E +A
Sbjct: 129 QFQIKNADNVFNTVMTYMPQDFR-GTLIRQQRERSERNKQAEVDA 172
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 25.4 bits (53), Expect = 8.6
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +1
Query: 37 QDLASRVVLSENPLDSPAIGLQKQPLFETNRNL--FYKSIEDLIFKFRYKDAENHLIFAL 210
+D + + S+NP+ + LQ + F+T + L F + I DL++ ++K+ + + L
Sbjct: 1320 KDSCQKKLKSQNPMSTTYENLQPRLSFKTEQTLSCFGQDILDLVW-HKFKERQMKIFLGL 1378
Query: 211 TYHPKDYKFNEL 246
+DY F+ L
Sbjct: 1379 ----QDYFFDLL 1386
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,704,337
Number of Sequences: 37544
Number of extensions: 109708
Number of successful extensions: 204
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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