Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13g09
         (302 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY681966-1|AAV87216.1| 2069|Homo sapiens citron protein.               30   1.5  
AY257469-1|AAP13528.1| 2027|Homo sapiens rho/rac-interacting cit...    30   1.5  
AY209000-1|AAP43922.1|  482|Homo sapiens citron Rho-interacting ...    30   1.5  
AK127414-1|BAC86967.1|  127|Homo sapiens protein ( Homo sapiens ...    28   6.2  

>AY681966-1|AAV87216.1| 2069|Homo sapiens citron protein.
          Length = 2069

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
 Frame = +1

Query: 31  LLQDLASRVVLSENPLDSPAIGLQKQ-PLFETNRNLFYKSIEDLIFKFRYK-DAENHLIF 204
           ++++ A+  + +   +   A+  Q+Q   FE  RN+  +S    I + +Y    +NHL  
Sbjct: 113 VVREKATGDIYAMKVMKKKALLAQEQVSFFEEERNILSRSTSPWIPQLQYAFQDKNHLYL 172

Query: 205 ALTYHPKDYKFNELLKYVQQLSVN 276
            + Y P     + L +Y  QL  N
Sbjct: 173 VMEYQPGGDLLSLLNRYEDQLDEN 196


>AY257469-1|AAP13528.1| 2027|Homo sapiens rho/rac-interacting citron
           kinase protein.
          Length = 2027

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
 Frame = +1

Query: 31  LLQDLASRVVLSENPLDSPAIGLQKQ-PLFETNRNLFYKSIEDLIFKFRYK-DAENHLIF 204
           ++++ A+  + +   +   A+  Q+Q   FE  RN+  +S    I + +Y    +NHL  
Sbjct: 113 VVREKATGDIYAMKVMKKKALLAQEQVSFFEEERNILSRSTSPWIPQLQYAFQDKNHLYL 172

Query: 205 ALTYHPKDYKFNELLKYVQQLSVN 276
            + Y P     + L +Y  QL  N
Sbjct: 173 VMEYQPGGDLLSLLNRYEDQLDEN 196


>AY209000-1|AAP43922.1|  482|Homo sapiens citron Rho-interacting
           kinase short form protein.
          Length = 482

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
 Frame = +1

Query: 31  LLQDLASRVVLSENPLDSPAIGLQKQ-PLFETNRNLFYKSIEDLIFKFRYK-DAENHLIF 204
           ++++ A+  + +   +   A+  Q+Q   FE  RN+  +S    I + +Y    +NHL  
Sbjct: 113 VVREKATGDIYAMKVMKKKALLAQEQVSFFEEERNILSRSTSPWIPQLQYAFQDKNHLYL 172

Query: 205 ALTYHPKDYKFNELLKYVQQLSVN 276
            + Y P     + L +Y  QL  N
Sbjct: 173 VMEYQPGGDLLSLLNRYEDQLDEN 196


>AK127414-1|BAC86967.1|  127|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45506 fis, clone BRTHA2020695. ).
          Length = 127

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 50  VVWC*AKIH*IVQPSVCKNNPCLKPIETYF 139
           ++ C A +H I+   +CKNN  L  +  YF
Sbjct: 86  ILQCFASLHRILSKILCKNNVYLAELSVYF 115


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,899,179
Number of Sequences: 237096
Number of extensions: 673440
Number of successful extensions: 1192
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 76,859,062
effective HSP length: 77
effective length of database: 58,602,670
effective search space used: 1347861410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)