Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13g09
         (302 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067218-1|AAC17021.1| 1451|Caenorhabditis elegans Hypothetical ...    28   1.1  
AF039045-8|AAB94199.1|  300|Caenorhabditis elegans Hypothetical ...    28   1.5  
AF039045-7|AAB94207.1|  333|Caenorhabditis elegans Hypothetical ...    28   1.5  
Z78419-9|CAB01707.1| 1153|Caenorhabditis elegans Hypothetical pr...    27   2.6  
Z73907-3|CAA98126.1| 1153|Caenorhabditis elegans Hypothetical pr...    27   2.6  
Z77657-8|CAB01151.2|  386|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z69904-5|CAA93778.1|  250|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z35641-1|CAA84706.2|  863|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z83123-10|CAB05609.2|  988|Caenorhabditis elegans Hypothetical p...    26   4.5  
Z81468-4|CAB03877.1|  394|Caenorhabditis elegans Hypothetical pr...    26   4.5  
AY095296-1|AAM26298.1|  988|Caenorhabditis elegans RecQ helicase...    26   4.5  
AL132863-7|CAJ80822.1|  231|Caenorhabditis elegans Hypothetical ...    26   4.5  
AL021181-1|CAA15983.1|  394|Caenorhabditis elegans Hypothetical ...    26   4.5  
Z98877-8|CAB63404.3|  475|Caenorhabditis elegans Hypothetical pr...    26   6.0  
AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta...    26   6.0  

>AF067218-1|AAC17021.1| 1451|Caenorhabditis elegans Hypothetical
           protein K10E9.1 protein.
          Length = 1451

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 202 FALTYHPKDYKFNELLKYVQQLSVNQQRTE 291
           FAL Y  + Y+FN++ K + Q+  +Q+  E
Sbjct: 363 FALKYPDRSYEFNKMYKKLYQIMEDQEEDE 392


>AF039045-8|AAB94199.1|  300|Caenorhabditis elegans Hypothetical
           protein F15E11.2 protein.
          Length = 300

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 113 KGCFCKPMAGLSNGFSLNTTRLAKSCS 33
           KG +C+P + + NG   N+T L   C+
Sbjct: 218 KGKYCEPASAVENGKVCNSTSLTDGCT 244


>AF039045-7|AAB94207.1|  333|Caenorhabditis elegans Hypothetical
           protein F15E11.11 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 113 KGCFCKPMAGLSNGFSLNTTRLAKSCS 33
           KG +C+P + + NG   N+T L   C+
Sbjct: 251 KGKYCEPASAVENGKVCNSTSLTDGCT 277


>Z78419-9|CAB01707.1| 1153|Caenorhabditis elegans Hypothetical
           protein F29D11.2 protein.
          Length = 1153

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +1

Query: 58  VLSENPLDSPAIGLQKQPLFETNRNLFY-KSIEDLI 162
           V+   P D P +   KQ L     N+FY K + DLI
Sbjct: 581 VMRHAPTDQPGVDAYKQMLISMLMNVFYQKKVIDLI 616


>Z73907-3|CAA98126.1| 1153|Caenorhabditis elegans Hypothetical
           protein F29D11.2 protein.
          Length = 1153

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +1

Query: 58  VLSENPLDSPAIGLQKQPLFETNRNLFY-KSIEDLI 162
           V+   P D P +   KQ L     N+FY K + DLI
Sbjct: 581 VMRHAPTDQPGVDAYKQMLISMLMNVFYQKKVIDLI 616


>Z77657-8|CAB01151.2|  386|Caenorhabditis elegans Hypothetical
           protein F08H9.7 protein.
          Length = 386

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 83  VQPSVCKNNPCLKPIETYFTNL 148
           +QP+VCK  P L P +T +  L
Sbjct: 141 IQPAVCKQMPALCPTQTSYGGL 162


>Z69904-5|CAA93778.1|  250|Caenorhabditis elegans Hypothetical
           protein ZK20.5 protein.
          Length = 250

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = +1

Query: 10  ISTKARL---LLQDLASRVVLSENPLDSPAIGLQKQPLFETNRNLFYKSIEDLIFKFRYK 180
           IST  R+   L++   ++VVL+E  + SP   +  + + +T R     SIE        K
Sbjct: 127 ISTPVRIEQSLMEGAYNKVVLTEKNIPSPFYTIFIRIMLDTIRREIATSIEKSFKVLTAK 186

Query: 181 DAENHLIF 204
           DA   L+F
Sbjct: 187 DATVMLLF 194


>Z35641-1|CAA84706.2|  863|Caenorhabditis elegans Hypothetical
           protein C38H2.1 protein.
          Length = 863

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +2

Query: 26  DCCYKIWQVVW 58
           +C YK+W+V+W
Sbjct: 781 ECTYKVWEVIW 791


>Z83123-10|CAB05609.2|  988|Caenorhabditis elegans Hypothetical
           protein T04A11.6 protein.
          Length = 988

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +1

Query: 94  GLQKQPLFETNRNLFYKSIEDLIFKF-RYKDAENHLIFALTYHPKDYKFNELLKY 255
           G  ++P  E NR     S ++ +    RY+ +EN    + +Y P  Y FNE  ++
Sbjct: 57  GHDEEPPVEVNRIQESTSFDEPVSSPPRYRPSENPGPSSSSYEPGHYSFNEYQQF 111


>Z81468-4|CAB03877.1|  394|Caenorhabditis elegans Hypothetical
           protein Y54G11B.1 protein.
          Length = 394

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 112 LFETNRNLFYKSIEDLIFKFRYKDAENH 195
           LF+TN NL Y  IE   ++FRY  +  H
Sbjct: 8   LFDTNNNLTYFVIEQ-FYRFRYLYSNVH 34


>AY095296-1|AAM26298.1|  988|Caenorhabditis elegans RecQ helicase
           protein.
          Length = 988

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +1

Query: 94  GLQKQPLFETNRNLFYKSIEDLIFKF-RYKDAENHLIFALTYHPKDYKFNELLKY 255
           G  ++P  E NR     S ++ +    RY+ +EN    + +Y P  Y FNE  ++
Sbjct: 57  GHDEEPPVEVNRIQESTSFDEPVSSPPRYRPSENPGPSSSSYEPGHYSFNEYQQF 111


>AL132863-7|CAJ80822.1|  231|Caenorhabditis elegans Hypothetical
           protein Y37H2A.12 protein.
          Length = 231

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +1

Query: 97  LQKQPLFETNRNLFYKSIEDLIFKFRYKD 183
           LQK+P+FE  +N F K+I D + ++R  D
Sbjct: 36  LQKKPVFEAYKN-FCKTIGDDLMEYREFD 63


>AL021181-1|CAA15983.1|  394|Caenorhabditis elegans Hypothetical
           protein Y54G11B.1 protein.
          Length = 394

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 112 LFETNRNLFYKSIEDLIFKFRYKDAENH 195
           LF+TN NL Y  IE   ++FRY  +  H
Sbjct: 8   LFDTNNNLTYFVIEQ-FYRFRYLYSNVH 34


>Z98877-8|CAB63404.3|  475|Caenorhabditis elegans Hypothetical
           protein Y69H2.7 protein.
          Length = 475

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/61 (24%), Positives = 32/61 (52%)
 Frame = +1

Query: 94  GLQKQPLFETNRNLFYKSIEDLIFKFRYKDAENHLIFALTYHPKDYKFNELLKYVQQLSV 273
           G+ +Q  F  +    +KS  + +FK +Y ++EN  +F + +  +  + ++ L   Q L V
Sbjct: 226 GIVRQCKFTYSGRNTFKSF-NYMFKHKYCESENFQLFYMNHEGRFMEVHDTLTLKQMLIV 284

Query: 274 N 276
           +
Sbjct: 285 H 285


>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
            family protein 3 protein.
          Length = 1092

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 133  LFYKSIEDLIFKFRYKDAENHLIFALTYHP-KDYKFNELLKYVQQLSVNQQRTESNA 300
            + YK + D   + R   +    + A+ YH   DY+ NE+L  ++ L+   QR ++ A
Sbjct: 898  IMYKLLGDEYPEVRQAASYGFGVMAINYHQISDYR-NEILSCLEPLAAMIQREDARA 953


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,308,457
Number of Sequences: 27780
Number of extensions: 114339
Number of successful extensions: 298
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)