Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13g08
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    29   0.30 
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    26   3.7  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    26   3.7  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    25   4.8  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    25   6.4  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    25   6.4  

>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 29.5 bits (63), Expect = 0.30
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 327 SLRENVNNQLHARDASQLHLLDWENFMGEFSSY 425
           +L E    QLH+RD  ++ L   +N +GEF  Y
Sbjct: 252 ALYEKDREQLHSRDWKKIQLAKTQNDLGEFLDY 284


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +3

Query: 255 RNPNKYKRYSELIARQSEAGGASASLRENVNNQLHARDASQL-HLL-DWENFMG 410
           RNP+  K+Y E  +    A GA  +L++   N L  R + +L H++ D +N  G
Sbjct: 213 RNPDSRKQYEETTSASLSAPGAFDALKQ--TNALERRASKRLSHMVKDQQNNEG 264


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 252 VRNPNKYKRYSELIARQSEAGGASASL 332
           V NP K KR  EL  + SE+G   ++L
Sbjct: 324 VNNPKKRKRALELALKGSESGSPDSTL 350


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 95  YFHFNYSQEFGQLSKQQRSSKVLRSQLRRH 184
           Y H   SQE+ + SKQ+R+S  LR  L +H
Sbjct: 78  YLH-EISQEYARYSKQKRAS--LRRYLEKH 104


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +1

Query: 196 MSCARRVRLPKRFFITQSGLE-TPTSTNDTAN*LRANQKPAAHLRVYAKT*TTSYMLETR 372
           +  ARR     R  + +  L  TP+ST  T +   +  +P+    VYAK+    ++ + R
Sbjct: 394 IKAARRASTANRVSVAKDRLSLTPSSTPSTPSPAESLPQPSNPTSVYAKSLKEFWLDKYR 453

Query: 373 LNYI 384
           L+ +
Sbjct: 454 LSIL 457


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 108  IIVRNLGNCPNNKDRVKCCDLNYGGIPPGHVMCPPR-EITKKV 233
            ++V +   C N+ D +   D NY  +  GHV+   R ++TK V
Sbjct: 1468 VVVTSYDICRNDVDELVKIDWNYCVLDEGHVIKNARAKLTKAV 1510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,030,917
Number of Sequences: 5004
Number of extensions: 39230
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)