Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13g08
(500 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0839 - 6540971-6541978,6542076-6542240,6542330-6542419,654... 31 0.52
01_01_0841 - 6564029-6564348,6564654-6564686,6564793-6565450,656... 30 0.91
01_01_0602 - 4484972-4485450,4485949-4485997,4486108-4486237,448... 29 1.6
11_08_0035 - 27838495-27838655,27838750-27838897,27838987-278391... 29 2.1
11_08_0021 + 27716298-27716478,27717137-27717309,27717408-277175... 29 2.1
04_04_0871 + 28898262-28898534,28899552-28900015,28900242-289003... 28 3.7
05_01_0575 + 5112988-5114082 27 6.4
11_06_0513 + 24466131-24469487 27 8.5
07_01_0843 - 6851354-6851518,6851654-6852448 27 8.5
06_01_1035 + 8127164-8127406,8127993-8128117,8129029-8130352 27 8.5
>01_01_0839 -
6540971-6541978,6542076-6542240,6542330-6542419,
6542536-6542736,6542886-6543098,6543216-6543461
Length = 640
Score = 31.1 bits (67), Expect = 0.52
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 183 IPPGHVMCPPREITKKVFHYAKWVRNPNKYKRYSELIARQSEAGG 317
+PP P EIT+ + A W ++ Y+RY+ ++ +S AGG
Sbjct: 532 LPPLAAAASPVEITQ-LNATASWKKDGRTYRRYAATVSNRSPAGG 575
>01_01_0841 -
6564029-6564348,6564654-6564686,6564793-6565450,
6565530-6565694,6565789-6565878,6565982-6566182,
6566525-6566737,6566835-6567077
Length = 640
Score = 30.3 bits (65), Expect = 0.91
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +3
Query: 171 NYGGIPPG--HVMCPPREITKKVFHYAKWVRNPNKYKRYSELIARQSEAGG 317
N+ +P G H P EI +K A W ++ Y RY+ ++ +S AGG
Sbjct: 528 NHTSLPHGANHQHASPVEIEQKAT--ASWEKDGRTYHRYAVTVSNRSPAGG 576
>01_01_0602 -
4484972-4485450,4485949-4485997,4486108-4486237,
4486636-4486778,4486819-4486877,4487167-4487200,
4487489-4487629,4487719-4487907,4488027-4488122,
4488163-4488225,4488588-4489097
Length = 630
Score = 29.5 bits (63), Expect = 1.6
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 186 PPGHVMCPPREITKKVFHYAKWVRNPNKYK 275
P V+CP RE+T++VF AK + + +++
Sbjct: 209 PRAVVLCPTRELTEQVFRVAKSISHHARFR 238
>11_08_0035 -
27838495-27838655,27838750-27838897,27838987-27839192,
27839291-27839972,27840074-27840247,27840963-27841181,
27841281-27841400,27841540-27841680,27841762-27841801,
27841969-27842129,27842506-27842589,27842659-27842721,
27842808-27842885,27842980-27842984,27843228-27843313,
27843354-27843544,27844089-27844166,27844255-27844365,
27844757-27844927,27845026-27845198,27845748-27845928
Length = 1090
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -2
Query: 406 IKFSQSNKCN*DASRACSWLFTFSRKLADAPPASDWRAINSLYRL 272
+K S N S SW+ +F + +A P++ WRA + ++ L
Sbjct: 777 LKILPSRSENSSQSSVISWVSSFITRAIEAYPSATWRACSCMHTL 821
>11_08_0021 +
27716298-27716478,27717137-27717309,27717408-27717578,
27717967-27718077,27718168-27718245,27718642-27718832,
27718873-27718958,27719202-27719206,27719301-27719378,
27719465-27719527,27719597-27719680,27720049-27720209,
27720377-27720416,27720774-27720893,27720993-27721211,
27721927-27722100,27722202-27722883,27722986-27723185,
27723269-27723407,27723502-27723677
Length = 1043
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -2
Query: 406 IKFSQSNKCN*DASRACSWLFTFSRKLADAPPASDWRAINSLYRL 272
+K S N S SW+ +F + +A P++ WRA + ++ L
Sbjct: 730 LKILPSRSENSSQSSVISWVSSFITRAIEAYPSATWRACSCMHTL 774
>04_04_0871 +
28898262-28898534,28899552-28900015,28900242-28900356,
28900510-28901157,28901282-28901374,28901658-28901795,
28902147-28902206
Length = 596
Score = 28.3 bits (60), Expect = 3.7
Identities = 27/97 (27%), Positives = 41/97 (42%)
Frame = +3
Query: 114 VRNLGNCPNNKDRVKCCDLNYGGIPPGHVMCPPREITKKVFHYAKWVRNPNKYKRYSELI 293
V+NL + P + R++ L GG G V I K FH ++V KR S
Sbjct: 204 VKNLTSEPRDASRLRIILLTSGGHFAGCVFDGNSVIAHKTFH--RYVVRAKAGKRQSGKD 261
Query: 294 ARQSEAGGASASLRENVNNQLHARDASQLHLLDWENF 404
A A A +SLR N+ + Q + W+++
Sbjct: 262 ATGKVAHSAGSSLRR--YNEAALKKEIQELIASWKSY 296
>05_01_0575 + 5112988-5114082
Length = 364
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 267 KYKRYSELIARQSEAGGASASLREN 341
KY++YSEL++ EA G +L EN
Sbjct: 171 KYEKYSELVSMLIEAQGEDETLVEN 195
>11_06_0513 + 24466131-24469487
Length = 1118
Score = 27.1 bits (57), Expect = 8.5
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Frame = +3
Query: 195 HVMCPPREITKKVFHYAKWVR-----NPN-KYKRYSELIARQSEAGGASASLRENVNNQL 356
H++C T F+Y+ WV NP Y++ ++ Q +AG + S ++N+ L
Sbjct: 233 HLLCEMCSATTHGFNYSLWVTVSQDFNPEWIYRQVMSKLSDQLKAGEDAESFWWSLNSDL 292
Query: 357 HARDASQLHLL 389
+ ++ HLL
Sbjct: 293 NEGLINKKHLL 303
>07_01_0843 - 6851354-6851518,6851654-6852448
Length = 319
Score = 27.1 bits (57), Expect = 8.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 267 KYKRYSELIARQSEAGGASASLREN 341
KY++YSEL++ EA G +L EN
Sbjct: 171 KYEKYSELVSVLMEAQGEDETLVEN 195
>06_01_1035 + 8127164-8127406,8127993-8128117,8129029-8130352
Length = 563
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 107 NYSQEFGQLSKQQRSSKVLRSQLRRH 184
N++ FG++S+ Q + KV QLR+H
Sbjct: 492 NFNSIFGEISRVQTTWKVPNPQLRQH 517
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,081,695
Number of Sequences: 37544
Number of extensions: 257951
Number of successful extensions: 689
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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