Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13g08
         (500 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78013-2|CAB01424.1|  453|Caenorhabditis elegans Hypothetical pr...    33   0.088
Z49128-2|CAA88959.1|  848|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z68227-18|CAA92521.1|  869|Caenorhabditis elegans Hypothetical p...    27   7.6  
Z68220-11|CAA92493.1|  869|Caenorhabditis elegans Hypothetical p...    27   7.6  

>Z78013-2|CAB01424.1|  453|Caenorhabditis elegans Hypothetical
           protein F15B9.6 protein.
          Length = 453

 Score = 33.5 bits (73), Expect = 0.088
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 54  ILKQNNPFNVIAENTSISIIVRNLGNCPNNKDRVKCCDLNY 176
           I++ N P +V     + +I+  NLG CP   DR+K C   +
Sbjct: 12  IIQANVPGSVQDSPEAYNILEPNLGGCPRTSDRIKFCSAKF 52


>Z49128-2|CAA88959.1|  848|Caenorhabditis elegans Hypothetical
           protein M03C11.2 protein.
          Length = 848

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 263 QQVQTIQRINCAPIRSRRRICEFTRKRKQPA 355
           +Q+Q+ +R+     ++RR + E +RKRK PA
Sbjct: 106 EQIQSRERLQSRIDQARRGMVEVSRKRKAPA 136


>Z68227-18|CAA92521.1|  869|Caenorhabditis elegans Hypothetical
           protein F49C12.15 protein.
          Length = 869

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/64 (23%), Positives = 28/64 (43%)
 Frame = +3

Query: 186 PPGHVMCPPREITKKVFHYAKWVRNPNKYKRYSELIARQSEAGGASASLRENVNNQLHAR 365
           PP  +     + TK+       V NP + +R S  + RQ+    A  S +   +++  +R
Sbjct: 32  PPAEITIKLEKDTKRKITIISEVENPKRARRGSADLRRQAIVNSAIRSAQSTASSRSRSR 91

Query: 366 DASQ 377
             S+
Sbjct: 92  SRSR 95


>Z68220-11|CAA92493.1|  869|Caenorhabditis elegans Hypothetical
           protein F49C12.15 protein.
          Length = 869

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/64 (23%), Positives = 28/64 (43%)
 Frame = +3

Query: 186 PPGHVMCPPREITKKVFHYAKWVRNPNKYKRYSELIARQSEAGGASASLRENVNNQLHAR 365
           PP  +     + TK+       V NP + +R S  + RQ+    A  S +   +++  +R
Sbjct: 32  PPAEITIKLEKDTKRKITIISEVENPKRARRGSADLRRQAIVNSAIRSAQSTASSRSRSR 91

Query: 366 DASQ 377
             S+
Sbjct: 92  SRSR 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,507,059
Number of Sequences: 27780
Number of extensions: 233063
Number of successful extensions: 646
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)