Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13g08
         (500 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    26   0.25 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.59 
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              23   2.4  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              23   2.4  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    23   2.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   7.2  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.8 bits (54), Expect = 0.25
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +2

Query: 227 KGFSLRKVG*KPQQVQTIQRINCAPIRSRRRICEFTRKRKQPATCSRRVSITF 385
           KGF  R +  K Q     +   C+ +R  R  C++ R +K  A    R ++ F
Sbjct: 88  KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRF 140


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.6 bits (51), Expect = 0.59
 Identities = 16/73 (21%), Positives = 31/73 (42%)
 Frame = +3

Query: 180 GIPPGHVMCPPREITKKVFHYAKWVRNPNKYKRYSELIARQSEAGGASASLRENVNNQLH 359
           G P   +  PPRE      ++ K  R+  +YKR       ++         +E  +N+ +
Sbjct: 129 GPPSVSLSSPPREPGTPRINFTKLKRHHPRYKRPRTTFEPRATDSRHYDRYKEEESNENY 188

Query: 360 ARDASQLHLLDWE 398
             +  + H +DW+
Sbjct: 189 NWEHKETH-IDWQ 200


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 267 KYKRYSELIARQSEAGGASASLRENVNNQL 356
           K +RY+E I +Q      S + +EN+  +L
Sbjct: 58  KPQRYNECILKQFNIVDESGNFKENIVQEL 87


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 267 KYKRYSELIARQSEAGGASASLRENVNNQL 356
           K +RY+E I +Q      S + +EN+  +L
Sbjct: 58  KPQRYNECILKQFNIVDESGNFKENIVQEL 87


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +2

Query: 227 KGFSLRKVG*KPQQVQTIQRINCAPIRSRRRICEFTRKRK 346
           +GF  R +  K Q     +   C+ +R  R  C++ R +K
Sbjct: 39  QGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKK 78


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 55  FSNKTIHLM*LLKILPFQL*SGIW 126
           FS+K IH+  L  + P+   + +W
Sbjct: 135 FSDKNIHVSFLRTVPPYSHQTDVW 158


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 319 APPASDWRAINSLYRLYLLGFLTH 248
           +PP  DW+ ++  Y   L G L H
Sbjct: 415 SPPPEDWKPLDKCY-FCLDGKLPH 437


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 6/23 (26%), Positives = 15/23 (65%)
 Frame = +3

Query: 246 KWVRNPNKYKRYSELIARQSEAG 314
           KW+      +++ +++AR ++AG
Sbjct: 86  KWITRSGTREQFIDMVARCNKAG 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,338
Number of Sequences: 438
Number of extensions: 2678
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)