Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13g06
         (757 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.77 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   5.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.4  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 596  QPPRSTTCTTVALRRKRFEFWLA 528
            QPP  TTCTT+  +  R   W++
Sbjct: 1083 QPPHDTTCTTLTSQTIRIS-WMS 1104


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
            ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 14/55 (25%), Positives = 22/55 (40%)
 Frame = -3

Query: 752  VLVLKKTFSNMSPSAAAFYQQRMAIVKKRYCAVRTLFVETKNYQRNFDSNLPQPP 588
            + V  +T   + P    F Q+ +  VK +   +    V       N DS+LP  P
Sbjct: 937  IQVTDETRKILEPFGFGFEQRGLVFVKGKGQLLTHYLVSKDGVSLNLDSDLPVEP 991


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/47 (19%), Positives = 22/47 (46%)
 Frame = +1

Query: 358 SLHIAFCVERQVSVGLNDFQRFVANARKVNYTSVVAPHREHLAAVPI 498
           ++ +  C    +++      R++A  R V+Y  +++P R  L    +
Sbjct: 143 AVDVWMCTASILNLCAISLDRYLAVTRPVSYPQIMSPRRARLLVATV 189


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +2

Query: 230 GHVLSTFTVSSQSVHKHECP 289
           GH +  FT   +  H+ +CP
Sbjct: 294 GHTVRCFTGGPRKSHESQCP 313


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 282 SCLCTDCDE 256
           SC C DCDE
Sbjct: 325 SCSCLDCDE 333


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,007
Number of Sequences: 438
Number of extensions: 4367
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)