Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13g05
(727 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 125 6e-30
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 46 7e-06
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 42 7e-05
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 42 7e-05
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 41 2e-04
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 41 2e-04
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 38 0.001
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 38 0.001
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 38 0.001
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 38 0.001
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 37 0.003
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 36 0.004
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 36 0.008
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 36 0.008
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 35 0.010
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 35 0.014
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 34 0.018
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 34 0.024
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 34 0.024
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 33 0.031
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 32 0.073
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 32 0.096
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 29 0.51
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 29 0.51
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 29 0.68
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 29 0.89
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 27 2.7
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 27 3.6
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 125 bits (302), Expect = 6e-30
Identities = 75/221 (33%), Positives = 115/221 (52%), Gaps = 11/221 (4%)
Frame = -1
Query: 655 VSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQ----FITSKEESQRPDDGELDG 488
V ++A+RK W KFG A G + TT+V E+V ++ + T+KEE Q
Sbjct: 61 VQHAVAERKKWKKFGKEAGKNSGVDARTTSVGENVQLRLQLGWTTTKEEEQDEAALAAAK 120
Query: 487 LKPPSSNVIFKCRTCQGDHLTLYCPFKH----TQIXXXXXXXXXXXXXXXXXASNKYIPP 320
+K S+V+ +CR C+G+H T CP+K +YI P
Sbjct: 121 VKAKGSSVV-RCRACKGNHFTAQCPYKSIIGPVDEPPLDASPVSSRASGALGEKGRYIAP 179
Query: 319 ---SSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKST 149
+ +GR G R+D +R++NLS+ E ++ DL + FG + ++YLAK+K T
Sbjct: 180 HLRAGSGRESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKET 239
Query: 148 GHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKP 26
G KGFA+V + R A KA L+G+G+++LIL E+SKP
Sbjct: 240 GRAKGFAFVSYYDRDCAIKARDRLDGYGWNNLILRCEFSKP 280
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 45.6 bits (103), Expect = 7e-06
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Frame = -1
Query: 283 PVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRA 104
P + + I ++ + A E ++DL FGPV L+L ++ TG+ KG+A + +
Sbjct: 3 PAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLE 62
Query: 103 DAAKAIQSLNGHGYDH-LILNVEWSKPPQ 20
A KA+ N D L ++ + +PP+
Sbjct: 63 QAQKAVDEKNLSLLDEKLEVDFAFLEPPE 91
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 42.3 bits (95), Expect = 7e-05
Identities = 23/68 (33%), Positives = 32/68 (47%)
Frame = -1
Query: 271 EDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAK 92
E + + NLS A E D+ G G + + L + +G KGF YV F D+AK
Sbjct: 363 EPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFS-DIDSAK 421
Query: 91 AIQSLNGH 68
+NGH
Sbjct: 422 KCVEMNGH 429
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 42.3 bits (95), Expect = 7e-05
Identities = 21/70 (30%), Positives = 37/70 (52%)
Frame = -1
Query: 250 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 71
+ NL+ E D+ L FG + ++++ +K T + KGFAY+ F DA +A L+
Sbjct: 327 LRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDA 386
Query: 70 HGYDHLILNV 41
+ +L+V
Sbjct: 387 KPFQGRLLHV 396
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 136 GFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 32
GF +V FK +A A A+ ++NG D L ++ S
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLS 700
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -1
Query: 169 LAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 74
+AK K G + FA++ FK DA KAI+ LN
Sbjct: 37 VAKTKE-GVSRRFAFIGFKNEEDADKAIRYLN 67
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 41.1 bits (92), Expect = 2e-04
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Frame = -1
Query: 331 YIPPSSAGRIPGRDQPPVRREDVT----AIRISNLSNFAVEADIDDLVKGFGPVHKLYLA 164
YI P + + + DV I ISNL E + +L+K FG + L
Sbjct: 283 YIVPQITPEVSQKRSDDYAKNDVLDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLI 342
Query: 163 KEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 71
K + G KGF + FK +DA AI L+G
Sbjct: 343 KNIADGSSKGFCFCEFKNPSDAEVAISGLDG 373
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 40.7 bits (91), Expect = 2e-04
Identities = 24/65 (36%), Positives = 34/65 (52%)
Frame = -1
Query: 256 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 77
I + NL + ++ DL G V + +A E TG KGF V F+ DAA +I+ L
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 340
Query: 76 NGHGY 62
NG+ Y
Sbjct: 341 NGYRY 345
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 38.3 bits (85), Expect = 0.001
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Frame = -1
Query: 259 AIRISNLSNFAVEADIDDLVKGFGPVHKLYLA---KEKSTGHCKG--FAYVHFKFRADAA 95
+I + NL + +D+ +L + FG K ++ K KST FA++ F+ + A
Sbjct: 21 SIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSAD 80
Query: 94 KAIQSLNGHGYDHLILNVEWS 32
AI SLNG + L VE++
Sbjct: 81 NAIASLNGSSFQGNTLKVEYT 101
Score = 35.1 bits (77), Expect = 0.010
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -1
Query: 214 IDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 71
+++L FG + LA ST KG+ +V F +A +AI +LNG
Sbjct: 437 LEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNG 484
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 38.3 bits (85), Expect = 0.001
Identities = 19/74 (25%), Positives = 38/74 (51%)
Frame = -1
Query: 250 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 71
+S +++ E ++ + FG V + + +E T +GF ++ F +A AI +LN
Sbjct: 105 VSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNS 164
Query: 70 HGYDHLILNVEWSK 29
+ +LNV+ +K
Sbjct: 165 QEFYGRVLNVQKAK 178
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 37.9 bits (84), Expect = 0.001
Identities = 20/66 (30%), Positives = 34/66 (51%)
Frame = -1
Query: 268 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKA 89
D + +S L+N ++ D + GPV + ++K +G KG AYV F D+ +A
Sbjct: 238 DRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF-CHEDSVQA 296
Query: 88 IQSLNG 71
+L+G
Sbjct: 297 AIALSG 302
Score = 33.5 bits (73), Expect = 0.031
Identities = 14/60 (23%), Positives = 31/60 (51%)
Frame = -1
Query: 250 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 71
+SN+ + D+ + + FG + ++L ++ KGF Y+ ++ A A++ +NG
Sbjct: 344 VSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQN-RSKGFGYIQYRNPISARNALEKMNG 402
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 37.9 bits (84), Expect = 0.001
Identities = 20/79 (25%), Positives = 36/79 (45%)
Frame = -1
Query: 256 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 77
+ + N+ E + D+ K GPV L + +G KG+ + + A AA A+++L
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 76 NGHGYDHLILNVEWSKPPQ 20
N + L V++ Q
Sbjct: 67 NNYDAGTRRLRVDFPTADQ 85
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = -1
Query: 259 AIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQS 80
++ + L EA + +L GPV + + ++ T G+AYV+F D KA+
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 79 LN 74
LN
Sbjct: 141 LN 142
Score = 37.1 bits (82), Expect = 0.003
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = -1
Query: 274 REDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAA 95
+ + T + I NL E + DL FG + L L K+++ +GF +V++ A
Sbjct: 257 KANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKP-RGFGFVNYANHECAQ 315
Query: 94 KAIQSLNGHGY 62
KA+ LN Y
Sbjct: 316 KAVDELNDKEY 326
Score = 34.3 bits (75), Expect = 0.018
Identities = 20/72 (27%), Positives = 33/72 (45%)
Frame = -1
Query: 286 PPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFR 107
P +R+ + I NL + D FG + +A ++ G+ KG+ +VHF
Sbjct: 160 PSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDE-LGNAKGYGFVHFDSV 218
Query: 106 ADAAKAIQSLNG 71
A AI+ +NG
Sbjct: 219 ESANAAIEHVNG 230
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 36.3 bits (80), Expect = 0.004
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = -1
Query: 250 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 71
+S LS E+DI+ +GP+ ++ + + K TG G+A+V F+ D A ++ G
Sbjct: 104 LSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAG 163
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 35.5 bits (78), Expect = 0.008
Identities = 23/87 (26%), Positives = 40/87 (45%)
Frame = -1
Query: 277 RREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADA 98
++E + + + NL +AD+ + G + ++ L + TG CKGF +V F
Sbjct: 223 KKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTC 282
Query: 97 AKAIQSLNGHGYDHLILNVEWSKPPQN 17
KA++ GH L + SK +N
Sbjct: 283 MKAMEL--GHNSWRLEYGEDRSKRMRN 307
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 35.5 bits (78), Expect = 0.008
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Frame = -1
Query: 286 PP--VRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFK 113
PP V +E + + I NLS ++ DL +GPV ++ L +T +G A+V ++
Sbjct: 2 PPSTVNQEVNSILFIKNLSFKITAEEMYDLFGRYGPVRQIRLG---NTVQTRGTAFVVYE 58
Query: 112 FRADAAKAIQSLNGHGYDHLILNVEWSKP 26
DA +A + L+G+ + L V + P
Sbjct: 59 NVQDARRACEKLSGYNFMDRYLVVHYYNP 87
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 35.1 bits (77), Expect = 0.010
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Frame = -1
Query: 283 PVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCK----GFAYVHF 116
P ++ D + + LS +++I L + G V K+ + + + G A+V F
Sbjct: 37 PAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTF 96
Query: 115 KFRADAAKAIQSLNGHGYDHLILNVEWSKPPQ 20
+ D KAI++LNG D + V+ ++P Q
Sbjct: 97 NNQEDVDKAIETLNGKTLDDREIVVQKARPVQ 128
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -1
Query: 184 VHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVE 38
+ ++ L E+ G +GF +V F D ++AI+ +NG L L V+
Sbjct: 245 IRRIKLRGEQRRG--RGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVK 291
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 34.7 bits (76), Expect = 0.014
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = -1
Query: 193 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 32
FG V ++ + K G GFA+V K R A +A+ SLNG D + V+W+
Sbjct: 131 FGKVREIKIPT-KGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWA 183
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 34.3 bits (75), Expect = 0.018
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -1
Query: 268 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 116
D ++ + N+ ++ G V+++ + +K TGH KGFAY+ F
Sbjct: 53 DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEF 103
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 33.9 bits (74), Expect = 0.024
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = -1
Query: 268 DVTAIRISNLSNFAV--EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAA 95
D + + + NL + + ++ ++DL FG + LA ++G KG+ +V F+ A
Sbjct: 380 DPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAV 439
Query: 94 KAIQSLNG 71
+A +LNG
Sbjct: 440 RAKDTLNG 447
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 33.9 bits (74), Expect = 0.024
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Frame = -1
Query: 313 AGRIPGRDQPPVRR-EDV--TAIRISNLSNFAVEAD-IDDLVKGFGPVHKLYLAKEKSTG 146
AG + PV ED TAI + N+ F++E D + D K G G
Sbjct: 182 AGSTANSNSTPVEPGEDTIPTAIVVKNIP-FSLEKDTLLDHFKQLGIPRPYAFNYHYDNG 240
Query: 145 HCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSK 29
+G A+ +F +A +Q+LNG+ + L VEW +
Sbjct: 241 IFRGLAFANFYRPEEAQVVVQTLNGYEINGRRLRVEWKR 279
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 33.5 bits (73), Expect = 0.031
Identities = 24/74 (32%), Positives = 38/74 (51%)
Frame = -1
Query: 250 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 71
+ NL N E +I + ++ FGP+ ++ + E++ A+VHF A A KA+Q L
Sbjct: 210 LGNLPNGITEDEIREDLEPFGPIDQIKIVTERN------IAFVHFLNIAAAIKAVQELP- 262
Query: 70 HGYDHLILNVEWSK 29
LN +WSK
Sbjct: 263 -------LNPKWSK 269
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 32.3 bits (70), Expect = 0.073
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = -1
Query: 250 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 71
+ N+ E + ++ GPV L + TG KG+ + F A A++ LN
Sbjct: 11 VGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLNN 70
Query: 70 HGYDHLILNVEW-SKPPQNN 14
+ VE+ S P+ N
Sbjct: 71 SELGPRKIRVEFPSNDPRRN 90
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 31.9 bits (69), Expect = 0.096
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = -1
Query: 277 RREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADA 98
R +D T I + NL ++ + +L GPV +++ +++ GF + F D
Sbjct: 7 RNQDAT-IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDV 65
Query: 97 AKAIQSLN 74
A Q LN
Sbjct: 66 EYACQILN 73
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 29.5 bits (63), Expect = 0.51
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = -1
Query: 241 LSNFAVEADIDDLVKGFGP---VHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAI 86
+ N A EA+ + L + FG + + + ++ T KGFAY+ FK KA+
Sbjct: 274 VGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKAL 328
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 29.5 bits (63), Expect = 0.51
Identities = 15/73 (20%), Positives = 33/73 (45%)
Frame = -1
Query: 256 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 77
+ + NLS + E I L G + ++ + ++ T GF +V + DA +++ +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 76 NGHGYDHLILNVE 38
+ D I+ +
Sbjct: 94 SRTSLDERIIRAD 106
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 29.1 bits (62), Expect = 0.68
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -1
Query: 148 GHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSK--PPQNN*KV 5
G +G A+ +F +A +Q LNG+ L VEW + PP +V
Sbjct: 270 GVFRGLAFANFHSPEEAKTVVQVLNGYEITGRRLRVEWKRQLPPAERERV 319
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 28.7 bits (61), Expect = 0.89
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = -1
Query: 283 PVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFK 113
P RED I L+ + + D + FG V + ++ +TG +GF ++ FK
Sbjct: 157 PFNREDGKMF-IGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFK 212
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 27.1 bits (57), Expect = 2.7
Identities = 18/64 (28%), Positives = 25/64 (39%)
Frame = -1
Query: 271 EDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAK 92
E T + +SN+S + K FG V L L TG G + F R+ +
Sbjct: 91 EPPTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSISV 150
Query: 91 AIQS 80
A S
Sbjct: 151 AAHS 154
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 26.6 bits (56), Expect = 3.6
Identities = 17/74 (22%), Positives = 34/74 (45%)
Frame = -1
Query: 223 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 44
+A + + FG + + + K+ S ++ + F+ + A AI + I +
Sbjct: 181 DAYLRSIYSSFGTLQNVVIQKDISKEKKYVYSIIVFETLSSAYSAINAEK----PSKIYD 236
Query: 43 VEWSKPPQNN*KVP 2
V+W KPP++N P
Sbjct: 237 VQWLKPPKSNSNTP 250
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,680,949
Number of Sequences: 5004
Number of extensions: 49262
Number of successful extensions: 158
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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