Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13g05
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    25   0.96 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   1.3  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    24   1.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.0  

>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -3

Query: 185 CA*TIPCEGKKYWTLQRICLC 123
           C+  +   G K W ++R C+C
Sbjct: 57  CSSYLQVSGSKIWQMERSCMC 77


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +1

Query: 607 NLQICSKFYVWQYSLKQHVFQFCMS*XFSLSCYH 708
           +L+  S  +V   ++   +  FCMS    ++CY+
Sbjct: 82  SLRTPSNLFVINLAISNFLMMFCMSPPMVINCYY 115


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +1

Query: 607 NLQICSKFYVWQYSLKQHVFQFCMS*XFSLSCYH 708
           +L+  S  +V   ++   +  FCMS    ++CY+
Sbjct: 48  SLRTPSNLFVINLAISDFLMMFCMSPPMVINCYY 81


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -1

Query: 115 KFRADAAKAIQSLNGHGYDHLILNV 41
           +F  +  KA+ S+N   ++H +L +
Sbjct: 872 EFALELKKALSSINEQSFNHFVLKM 896


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = -1

Query: 100 AAKAIQSLNGHGYD-HL 53
           AA A+ S  GHG+D HL
Sbjct: 11  AAAAVTSAGGHGFDAHL 27


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = -1

Query: 100 AAKAIQSLNGHGYD-HL 53
           AA A+ S  GHG+D HL
Sbjct: 11  AAAAVTSAGGHGFDAHL 27


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 248 YTDGSYVFTTHRGL 289
           Y DG+ VF  H G+
Sbjct: 799 YIDGNVVFVCHNGM 812


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,854
Number of Sequences: 438
Number of extensions: 3158
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)