Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13g01
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...   143   3e-35
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    33   0.063
SPBC839.09c |mrp21||mitochondrial ribosomal protein subunit Mrp2...    29   1.0  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    28   1.8  
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat...    27   2.4  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    27   4.1  
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom...    26   5.5  
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-...    26   7.2  
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    26   7.2  
SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|ch...    26   7.2  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   9.6  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    25   9.6  
SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces p...    25   9.6  

>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score =  143 bits (346), Expect = 3e-35
 Identities = 90/246 (36%), Positives = 140/246 (56%), Gaps = 12/246 (4%)
 Frame = -2

Query: 786 KELTQQLGSISPICLVHRVTSTIHLIDANNGQVCDVSSTVYWRNPFSPICNPKQLVEYIV 607
           K + +  G+I+ + +  +V  TI  +D    Q CD+  ++YWR PF  + +  +L E+IV
Sbjct: 265 KTVAKAHGNIAQLVVCTKVGPTIRFLDPLTLQTCDMLPSIYWRTPFPALADIPELTEFIV 324

Query: 606 MDIDILKEHEKKSFPGQGMVSNKHVIADVWIVKASELGMDISPVHTRTHLGHILKPGDTV 427
            D+D+L           G  + K+ +ADV ++K+S    D S   TRTHLG IL  G+TV
Sbjct: 325 ADVDLL-----------GPTNGKYALADVELIKSS----DGSTHLTRTHLGGILNAGNTV 369

Query: 426 LGYNLSESNVNDTNFDKLDRSNIPDVFLVKKFYGEKSARRRARAWKLK----HMAEEF-H 262
           L Y+L+ +N N+  +D L   +IP+V +VKK Y +   +++ R W+LK      AE+   
Sbjct: 370 LAYHLAVTNFNNEVYDTLREDSIPEVVIVKKTYPQ--TKKKNRNWRLKTIGMQKAEDVKK 427

Query: 261 EGLSSTNDDYNDFLDDLEEDPAFRQNVNIFK-DTSRIAV-DT-----DEIDPSLPRITLA 103
           + +     DY  FL +LEEDP  RQ VN++K     IAV DT     DE+D  +P+I++ 
Sbjct: 428 QDIERQERDYELFLQNLEEDPELRQGVNLYKAPVKAIAVADTDMDEEDEVDEDIPQISVD 487

Query: 102 EMLDDL 85
           E+LDD+
Sbjct: 488 ELLDDV 493


>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 32.7 bits (71), Expect = 0.063
 Identities = 21/74 (28%), Positives = 34/74 (45%)
 Frame = -2

Query: 339 KKFYGEKSARRRARAWKLKHMAEEFHEGLSSTNDDYNDFLDDLEEDPAFRQNVNIFKDTS 160
           K F    S  R  R+      ++E+ +   +  D  NDF+D   EDPAF     I     
Sbjct: 58  KSFSAPTSPTRNKRSGS---SSQEYKKSSGTRGDGANDFVD---EDPAFIPPARILFPEE 111

Query: 159 RIAVDTDEIDPSLP 118
           +++++ D I P+ P
Sbjct: 112 KLSMEWDNIMPNAP 125


>SPBC839.09c |mrp21||mitochondrial ribosomal protein subunit
           Mrp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
 Frame = -2

Query: 426 LGYNLSESNVNDTNFDKLDR----SNIPDVFLVKKFYGEKSARRRARAWKLKHMAEEFHE 259
           LG +++  N     F ++DR    +N+P +F  ++FY EK + +R+R    +H A  F  
Sbjct: 47  LGASVTVGNSLTRAFRQVDRICQRNNVPRLFRSQRFY-EKPSEKRSRVRSERHRA-RFRA 104

Query: 258 GL 253
           G+
Sbjct: 105 GI 106


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 41/183 (22%), Positives = 70/183 (38%), Gaps = 8/183 (4%)
 Frame = -2

Query: 612  IVMDIDIL-KEHEKKSFPGQGMVSNKHVIADVWIVKASELGMDISPVHTRTHLGHILKPG 436
            I +DID L  + E  S+      +N  V      +  + +  D +     +H   I    
Sbjct: 496  IAVDIDSLPSDSESASYNTDD--ANSVVSPSKDGISTTTVSSDATRSSQSSHFRIIEDLP 553

Query: 435  DTVLGYNLSESNVNDTN-------FDKLDRSNIPDVFLVKKFYGEKSARRRARAWKLKHM 277
            D+ L Y+L +    D +       F K  RS+ P      ++YGE            +H 
Sbjct: 554  DSKLKYSLEDQATYDQSSRYPGRHFGKTGRSHFPRA---PEYYGENDFEEDEVYRDDRHY 610

Query: 276  AEEFHEGLSSTNDDYNDFLDDLEEDPAFRQNVNIFKDTSRIAVDTDEIDPSLPRITLAEM 97
              E        +D+Y+  L   + +P   +N  +F+DT+   +DTD  D +       E 
Sbjct: 611  ENE--------HDEYDPNLIYYDNEPT-EENRLVFEDTNNTFIDTDSDDSNADESQFLEY 661

Query: 96   LDD 88
             +D
Sbjct: 662  AND 664


>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
           subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 308

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 549 VSNKHVIADVWIVKASELGMDISPVHTRTHLGHILKPGDTVLGYNL 412
           V  K VI    ++  S L M   P  T ++LGHI KP    L + L
Sbjct: 150 VKGKVVIDAFRLINPSTLMMGQEPRQTTSNLGHINKPSIQALIHGL 195


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
 Frame = -2

Query: 615 YIVMDIDILKEHEKKSFPGQGMVSNKHVIADVWIVKASELGMDISPVHTRTHLGHILKPG 436
           Y++ DIDI     K+     GM++      D   V  S++      ++     GH+    
Sbjct: 113 YVLNDIDIYDIETKQWSHIPGMITENQTNDDAKEVNGSDVDEKSKHLYPSARYGHLHCVL 172

Query: 435 DTVL----GYNLSESNVNDTNFDKLD 370
           D  L    G +LS S + + N   LD
Sbjct: 173 DHYLIIFCGQDLSNSYIEEINIFDLD 198


>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 597 DILKEHEKKSFPGQGMVSNKH 535
           + ++ +E K  PGQGM+S +H
Sbjct: 295 ECIRPNELKVLPGQGMLSQRH 315


>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
           L-lysine forming] |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 368

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = -2

Query: 588 KEHEKKSFPGQGMVSNKHVIADVWIVKASEL-GMDISPV-HTRTHLGHILK 442
           KE E+  FP     S +H   D +I+   EL   D SP+ HT     H  K
Sbjct: 49  KEFERLGFPMVPEGSWRHAPKDAYIIGLKELPENDNSPLKHTHIQFAHCYK 99


>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 132 DPSLPRITLAEMLDDLTIED 73
           DP+LPRIT  E +D L+ E+
Sbjct: 291 DPNLPRITRIEDIDSLSEEN 310


>SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 232

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = -2

Query: 240 DDYNDFLDDLEEDPAF----RQNVNIFKDTSRIAVDTDEI 133
           DD +D LDDL+   AF    ++N++  K T   + + + I
Sbjct: 28  DDLDDILDDLDVPSAFKNEEKKNIDEHKQTGNTSKENERI 67


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = -2

Query: 321 KSARRRARAWKLKHMAEEFHEGLSSTNDDYNDFLDDLEEDPAFRQNVNIFKD 166
           K  R+R +  + + M +   + L    D+Y  F D   E P  + N+   K+
Sbjct: 184 KDLRKRLQKLETEDMNKSNRKLLQDATDEYAKFKDKFPEAPLDKDNLQTQKE 235


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 222 LDDLEEDPAFRQNVNIFKDTSRIAVDTDEI 133
           LDD + + A+ + + + KDTS+    T E+
Sbjct: 300 LDDSDLESAYNEELEMKKDTSKPTASTKEV 329


>SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -2

Query: 672 TVYWRNPFSPICNPKQLVEYIVMDIDILKEHEKKSFPGQGMVSNKHVIADVW 517
           TVY+  P SP    +   +   +DI ++K H+   F  Q +  +K V+  ++
Sbjct: 81  TVYYPKPSSPELYKRLCKQLDDLDIPVVKSHDSNHF-SQLLRDSKLVVDSIF 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,334,103
Number of Sequences: 5004
Number of extensions: 70616
Number of successful extensions: 202
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)