Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13g01
(808 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_1016 - 22262760-22264331 133 1e-31
01_07_0232 + 42182942-42183490,42183593-42183661,42184320-421844... 86 4e-17
01_05_0048 - 17561963-17563585 31 0.82
02_01_0162 - 1126273-1126593,1126950-1127117,1127211-1127501,112... 29 4.4
03_06_0576 + 34832900-34832911,34833006-34833122,34833752-348338... 29 5.8
03_05_0843 + 28126480-28127007,28127092-28127457,28129388-281294... 28 7.6
>10_08_1016 - 22262760-22264331
Length = 523
Score = 133 bits (322), Expect = 1e-31
Identities = 84/251 (33%), Positives = 133/251 (52%), Gaps = 7/251 (2%)
Frame = -2
Query: 789 SKELTQQLGSISPICLVHRVTSTIHLIDANNGQVCDVSSTVYWRNPFSPICNPKQLVEYI 610
S ++++ LG + PI L +VT+ I L+D +V + Y F KQLVEYI
Sbjct: 270 SPQVSRDLGGLGPIVLCIKVTNAIALLDPLTLRVHHLEEKKYRVYNFKAALTSKQLVEYI 329
Query: 609 VMDIDILKEHEKKSFPGQGMVSNKHVIADVWIVKASELGMDISPVHTRTHLGHILKPGDT 430
V+DI EHE G +++ +A + + S+ G + + RTHLGH+L PGD
Sbjct: 330 VLDI----EHESPEITIDG---SRYQLAYAQVARVSDFGKNDTMFTVRTHLGHLLNPGDL 382
Query: 429 VLGYNLSESNVNDTNFD-KLDRSNIPDVFLVKKFYGEKSARRRARAWKLKHMAEEFH--- 262
LGY+L +N+ND + D + R ++P+V LVKK + + R R R WKLK + E
Sbjct: 383 ALGYDLYGANLNDDDMDTAMMRHSLPEVILVKKSFAK---RPRTRRWKLKRLPMEEDAVN 439
Query: 261 --EG-LSSTNDDYNDFLDDLEEDPAFRQNVNIFKDTSRIAVDTDEIDPSLPRITLAEMLD 91
+G L D+Y +FL DLE + R ++++KD + I +P + + E+++
Sbjct: 440 KAKGELEKRADEYEEFLRDLEHNSDIRFQIDLYKDEDYRSEMASTIGDDVPTVPIEELIE 499
Query: 90 DLTIEDVEMSD 58
DL++ D E D
Sbjct: 500 DLSLGDDEEED 510
>01_07_0232 + 42182942-42183490,42183593-42183661,42184320-42184451,
42184547-42184600,42184714-42184758,42185383-42185522,
42185777-42185902,42185985-42186002,42186631-42187276,
42188121-42188843
Length = 833
Score = 85.8 bits (203), Expect = 4e-17
Identities = 57/161 (35%), Positives = 86/161 (53%)
Frame = -2
Query: 786 KELTQQLGSISPICLVHRVTSTIHLIDANNGQVCDVSSTVYWRNPFSPICNPKQLVEYIV 607
KE ++ LG + PI L +VT+ + L+D + +V + Y R P +QLVEY+V
Sbjct: 607 KEASRDLGGLGPIVLCVKVTNALALLDTSTLRVVHLGIKEYDRCRLEPALTSRQLVEYVV 666
Query: 606 MDIDILKEHEKKSFPGQGMVSNKHVIADVWIVKASELGMDISPVHTRTHLGHILKPGDTV 427
+D+D HE + P G +A + +AS+LG + + RTHLGH+L G
Sbjct: 667 LDVD----HEPE--PAAG-------VAYAQVARASDLGKNDTIFTVRTHLGHVLNAGHRA 713
Query: 426 LGYNLSESNVNDTNFDKLDRSNIPDVFLVKKFYGEKSARRR 304
LG +L +NVN N D ++ +PD LVKK + S RR+
Sbjct: 714 LGDDLYGANVN--NHD-VESHGLPDAVLVKKINEKGSTRRQ 751
>01_05_0048 - 17561963-17563585
Length = 540
Score = 31.5 bits (68), Expect = 0.82
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = -2
Query: 312 RRRARAWKLKHMAEEFHE----GLSSTNDDYNDFLDDLEEDPAFRQNVNIFKDTSR 157
RR ARA K+K E F + GL + DYN +D L + ++ IFK+ R
Sbjct: 196 RRYARARKVKEAVETFEKMSSFGLKTDLSDYNWLIDILSKSKQVKKAHAIFKEMKR 251
>02_01_0162 -
1126273-1126593,1126950-1127117,1127211-1127501,
1127688-1127763,1127841-1127886,1128006-1128072,
1128162-1128234,1128321-1128561,1128669-1128822,
1128915-1129042,1129481-1129535,1129629-1129838
Length = 609
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -2
Query: 324 EKSARRRARAWKLKHMAEEFHEGLSSTNDDYNDFLDDLEEDPAFRQNVNI--FKDTSRIA 151
+K + + W+L + + ++ DY+D + +F ++ K ++A
Sbjct: 13 QKKGKAKVLKWRLSNTDMDMKGEEGGSDGDYDDTVLSSLTTASFSSLISRKRVKSLGKVA 72
Query: 150 VDTDEIDPSLPR 115
D D IDP +PR
Sbjct: 73 EDCDAIDPPVPR 84
>03_06_0576 +
34832900-34832911,34833006-34833122,34833752-34833810,
34833901-34833960,34834197-34834250,34834332-34834380,
34834493-34834540,34834889-34834954,34835591-34835641,
34835732-34835851,34835921-34836005,34836428-34836509,
34836666-34836774,34837005-34837051,34837131-34837188,
34839114-34839220,34839700-34839765,34839833-34839879,
34839977-34840042,34840146-34840243,34840344-34840469,
34840551-34840835,34840920-34840985,34841079-34841228
Length = 675
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 264 HEGLSSTNDDYNDFLDDLEEDPAFR 190
H+ LSS +D+ + LDDL+E FR
Sbjct: 552 HKPLSSISDELSSDLDDLDESDGFR 576
>03_05_0843 +
28126480-28127007,28127092-28127457,28129388-28129487,
28130266-28130546,28130643-28130705,28131276-28131431,
28131913-28132080,28132158-28132298,28132714-28132840,
28132888-28132994,28134142-28134372,28134446-28134559,
28135091-28135261
Length = 850
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -2
Query: 273 EEFHEGLSSTNDDYNDFLDDLEEDPAFRQNVNIFKDT 163
E++ EG +S +DDYN+ D E++ + NI+ DT
Sbjct: 328 EKYSEGSASESDDYNEPQDPAEDET--DDDENIYFDT 362
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,669,813
Number of Sequences: 37544
Number of extensions: 420852
Number of successful extensions: 1197
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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