Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13g01
(808 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY058494-1|AAL13723.1| 521|Drosophila melanogaster GM14705p pro... 277 1e-74
AL009194-7|CAA15695.1| 521|Drosophila melanogaster EG:152A3.1 p... 277 1e-74
AE014298-354|AAF45744.1| 521|Drosophila melanogaster CG3460-PA ... 277 1e-74
AJ238705-1|CAB42049.1| 521|Drosophila melanogaster Nmd3 protein... 275 5e-74
M63450-1|AAA29051.1| 3005|Drosophila melanogaster zinc-finger ho... 29 5.7
AY069474-1|AAL39619.1| 652|Drosophila melanogaster LD21421p pro... 29 5.7
AF132814-1|AAD24472.1| 598|Drosophila melanogaster myoglianin p... 29 5.7
AE014135-89|AAF59339.2| 3005|Drosophila melanogaster CG1449-PA p... 29 5.7
AE013599-2251|AAF58014.2| 652|Drosophila melanogaster CG4282-PA... 29 5.7
BT010243-1|AAQ23561.1| 672|Drosophila melanogaster RE42927p pro... 29 9.9
AY373570-1|AAR20251.1| 2726|Drosophila melanogaster 309 kDa cent... 29 9.9
AY060720-1|AAL28268.1| 323|Drosophila melanogaster GH16729p pro... 29 9.9
AE014134-2381|AAN10840.1| 672|Drosophila melanogaster CG31814-P... 29 9.9
AE014134-882|AAF52220.1| 323|Drosophila melanogaster CG4230-PA ... 29 9.9
>AY058494-1|AAL13723.1| 521|Drosophila melanogaster GM14705p
protein.
Length = 521
Score = 277 bits (680), Expect = 1e-74
Identities = 127/247 (51%), Positives = 182/247 (73%), Gaps = 3/247 (1%)
Frame = -2
Query: 789 SKELTQQLGSISPICLVHRVTSTIHLIDANNGQVCDVSSTVYWRNPFSPICNPKQLVEYI 610
SK+L QLG++SP+ LV+RV+S+IHLID Q+ +++S VY+R PF +CNPKQLVEY+
Sbjct: 267 SKKLRHQLGNLSPLVLVNRVSSSIHLIDPLTAQIAELTSQVYFRAPFEAVCNPKQLVEYV 326
Query: 609 VMDIDILKEHEKKSFPGQGMVSNKHVIADVWIVKASELGMDISPVHTRTHLGHILKPGDT 430
VMDID++ E ++K++PGQG VS KH + D+W+V+ASELG++ +P+HTR+HLGH+LK GD+
Sbjct: 327 VMDIDVIMEKDRKTYPGQGQVSFKHALCDIWVVRASELGINDNPIHTRSHLGHLLKVGDS 386
Query: 429 VLGYNLSESNVNDTNFDKLDRSNIPDVFLVKKFYGEKSARRRARAWKLKHMAEEFHEGLS 250
V+GYN E+N+ND FDKL IPDV LV+K Y ++ R R WK+KH+A E + S
Sbjct: 387 VMGYNTGEANINDLEFDKLSSDEIPDVILVRKHY-DRQTRLSQRVWKIKHLAAEATDERS 445
Query: 249 STNDDYNDFLDDLEEDPAFRQNVNIFKDTSR-IAVDTDEIDPSLPRITLAEMLDDLTIE- 76
DY++FLDDLEE+ R VNI++DT++ I ++ +P+ITL EML+D+T+E
Sbjct: 446 KY--DYHEFLDDLEENEDIRGQVNIYRDTNKTIPIEVQAAGGDVPQITLEEMLEDMTLEC 503
Query: 75 -DVEMSD 58
D EM +
Sbjct: 504 ADDEMGE 510
>AL009194-7|CAA15695.1| 521|Drosophila melanogaster EG:152A3.1
protein.
Length = 521
Score = 277 bits (680), Expect = 1e-74
Identities = 127/247 (51%), Positives = 182/247 (73%), Gaps = 3/247 (1%)
Frame = -2
Query: 789 SKELTQQLGSISPICLVHRVTSTIHLIDANNGQVCDVSSTVYWRNPFSPICNPKQLVEYI 610
SK+L QLG++SP+ LV+RV+S+IHLID Q+ +++S VY+R PF +CNPKQLVEY+
Sbjct: 267 SKKLRHQLGNLSPLVLVNRVSSSIHLIDPLTAQIAELTSQVYFRAPFEAVCNPKQLVEYV 326
Query: 609 VMDIDILKEHEKKSFPGQGMVSNKHVIADVWIVKASELGMDISPVHTRTHLGHILKPGDT 430
VMDID++ E ++K++PGQG VS KH + D+W+V+ASELG++ +P+HTR+HLGH+LK GD+
Sbjct: 327 VMDIDVIMEKDRKTYPGQGQVSFKHALCDIWVVRASELGINDNPIHTRSHLGHLLKVGDS 386
Query: 429 VLGYNLSESNVNDTNFDKLDRSNIPDVFLVKKFYGEKSARRRARAWKLKHMAEEFHEGLS 250
V+GYN E+N+ND FDKL IPDV LV+K Y ++ R R WK+KH+A E + S
Sbjct: 387 VMGYNTGEANINDLEFDKLSSDEIPDVILVRKHY-DRQTRLSQRVWKIKHLAAEATDERS 445
Query: 249 STNDDYNDFLDDLEEDPAFRQNVNIFKDTSR-IAVDTDEIDPSLPRITLAEMLDDLTIE- 76
DY++FLDDLEE+ R VNI++DT++ I ++ +P+ITL EML+D+T+E
Sbjct: 446 KY--DYHEFLDDLEENEDIRGQVNIYRDTNKTIPIEVQAAGGDVPQITLEEMLEDMTLEC 503
Query: 75 -DVEMSD 58
D EM +
Sbjct: 504 ADDEMGE 510
>AE014298-354|AAF45744.1| 521|Drosophila melanogaster CG3460-PA
protein.
Length = 521
Score = 277 bits (680), Expect = 1e-74
Identities = 127/247 (51%), Positives = 182/247 (73%), Gaps = 3/247 (1%)
Frame = -2
Query: 789 SKELTQQLGSISPICLVHRVTSTIHLIDANNGQVCDVSSTVYWRNPFSPICNPKQLVEYI 610
SK+L QLG++SP+ LV+RV+S+IHLID Q+ +++S VY+R PF +CNPKQLVEY+
Sbjct: 267 SKKLRHQLGNLSPLVLVNRVSSSIHLIDPLTAQIAELTSQVYFRAPFEAVCNPKQLVEYV 326
Query: 609 VMDIDILKEHEKKSFPGQGMVSNKHVIADVWIVKASELGMDISPVHTRTHLGHILKPGDT 430
VMDID++ E ++K++PGQG VS KH + D+W+V+ASELG++ +P+HTR+HLGH+LK GD+
Sbjct: 327 VMDIDVIMEKDRKTYPGQGQVSFKHALCDIWVVRASELGINDNPIHTRSHLGHLLKVGDS 386
Query: 429 VLGYNLSESNVNDTNFDKLDRSNIPDVFLVKKFYGEKSARRRARAWKLKHMAEEFHEGLS 250
V+GYN E+N+ND FDKL IPDV LV+K Y ++ R R WK+KH+A E + S
Sbjct: 387 VMGYNTGEANINDLEFDKLSSDEIPDVILVRKHY-DRQTRLSQRVWKIKHLAAEATDERS 445
Query: 249 STNDDYNDFLDDLEEDPAFRQNVNIFKDTSR-IAVDTDEIDPSLPRITLAEMLDDLTIE- 76
DY++FLDDLEE+ R VNI++DT++ I ++ +P+ITL EML+D+T+E
Sbjct: 446 KY--DYHEFLDDLEENEDIRGQVNIYRDTNKTIPIEVQAAGGDVPQITLEEMLEDMTLEC 503
Query: 75 -DVEMSD 58
D EM +
Sbjct: 504 ADDEMGE 510
>AJ238705-1|CAB42049.1| 521|Drosophila melanogaster Nmd3 protein
protein.
Length = 521
Score = 275 bits (674), Expect = 5e-74
Identities = 126/247 (51%), Positives = 182/247 (73%), Gaps = 3/247 (1%)
Frame = -2
Query: 789 SKELTQQLGSISPICLVHRVTSTIHLIDANNGQVCDVSSTVYWRNPFSPICNPKQLVEYI 610
SK+L QLG++SP+ LV+RV+S+IHLID Q+ +++S VY+R PF +CNPKQLVEY+
Sbjct: 267 SKKLRHQLGNLSPLVLVNRVSSSIHLIDPLTAQIAELTSQVYFRAPFEAVCNPKQLVEYV 326
Query: 609 VMDIDILKEHEKKSFPGQGMVSNKHVIADVWIVKASELGMDISPVHTRTHLGHILKPGDT 430
VMDID++ E ++K++PGQG VS KH + D+W+V+ASELG++ +P+HTR+HLGH+LK GD+
Sbjct: 327 VMDIDVIMEKDRKTYPGQGQVSFKHALCDIWVVRASELGINDNPIHTRSHLGHLLKVGDS 386
Query: 429 VLGYNLSESNVNDTNFDKLDRSNIPDVFLVKKFYGEKSARRRARAWKLKHMAEEFHEGLS 250
V+GYN + S++ND FDKL IPDV LV+K Y ++ R R WK+KH+A E + S
Sbjct: 387 VMGYNTARSHINDLEFDKLSSDEIPDVILVRKHY-DRQTRLSQRVWKIKHLAAEATDERS 445
Query: 249 STNDDYNDFLDDLEEDPAFRQNVNIFKDTSR-IAVDTDEIDPSLPRITLAEMLDDLTIE- 76
DY++FLDDLEE+ R VNI++DT++ I ++ +P+ITL EML+D+T+E
Sbjct: 446 KY--DYHEFLDDLEENEDIRGQVNIYRDTNKTIPIEVQAAGGDVPQITLEEMLEDMTLEC 503
Query: 75 -DVEMSD 58
D EM +
Sbjct: 504 ADDEMGE 510
>M63450-1|AAA29051.1| 3005|Drosophila melanogaster zinc-finger
homeodomain protein 2 protein.
Length = 3005
Score = 29.5 bits (63), Expect = 5.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 546 SNKHVIADVWIVKASELGMDISPVHTRTHL 457
++KH++A+ V+ G D+SP+ THL
Sbjct: 1587 THKHLLAESHAVEREVSGSDVSPIELETHL 1616
>AY069474-1|AAL39619.1| 652|Drosophila melanogaster LD21421p
protein.
Length = 652
Score = 29.5 bits (63), Expect = 5.7
Identities = 19/89 (21%), Positives = 34/89 (38%)
Frame = -2
Query: 402 NVNDTNFDKLDRSNIPDVFLVKKFYGEKSARRRARAWKLKHMAEEFHEGLSSTNDDYNDF 223
+V+ D+L+ + I + + E R R WK+ HE +S+ +
Sbjct: 23 DVHSARGDQLEVTTIVNQHFPVQISKESDERICGRCWKIVSDFHTLHEFVSAAQSSLQET 82
Query: 222 LDDLEEDPAFRQNVNIFKDTSRIAVDTDE 136
L ED Q F + ++A +E
Sbjct: 83 KVALMEDDPLTQETTSFPEIIKLATQEEE 111
>AF132814-1|AAD24472.1| 598|Drosophila melanogaster myoglianin
protein.
Length = 598
Score = 29.5 bits (63), Expect = 5.7
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -2
Query: 345 LVKKFYGEKSARRRARAWKLKHMAEEFHEGLSSTNDDY--NDFLDD 214
++ FY + +A + W +EFH ++ T D+ DF D+
Sbjct: 236 IIDNFYRDYNASSKTTVWNRMESIDEFHLSINDTYGDHIMTDFFDE 281
>AE014135-89|AAF59339.2| 3005|Drosophila melanogaster CG1449-PA
protein.
Length = 3005
Score = 29.5 bits (63), Expect = 5.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 546 SNKHVIADVWIVKASELGMDISPVHTRTHL 457
++KH++A+ V+ G D+SP+ THL
Sbjct: 1587 THKHLLAESHAVEREVSGSDVSPIELETHL 1616
>AE013599-2251|AAF58014.2| 652|Drosophila melanogaster CG4282-PA
protein.
Length = 652
Score = 29.5 bits (63), Expect = 5.7
Identities = 19/89 (21%), Positives = 34/89 (38%)
Frame = -2
Query: 402 NVNDTNFDKLDRSNIPDVFLVKKFYGEKSARRRARAWKLKHMAEEFHEGLSSTNDDYNDF 223
+V+ D+L+ + I + + E R R WK+ HE +S+ +
Sbjct: 23 DVHSARGDQLEVTTIVNQHFPVQISKESDERICGRCWKIVSDFHTLHEFVSAAQSSLQET 82
Query: 222 LDDLEEDPAFRQNVNIFKDTSRIAVDTDE 136
L ED Q F + ++A +E
Sbjct: 83 KVALMEDDPLTQETTSFPEIIKLATQEEE 111
>BT010243-1|AAQ23561.1| 672|Drosophila melanogaster RE42927p
protein.
Length = 672
Score = 28.7 bits (61), Expect = 9.9
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = -2
Query: 765 GSISPICLVHRVTSTIHLIDANNGQVCDVSSTVYWRNPFSPICNPKQLVEYIVMDIDILK 586
G + I V R+ +L A+NG +S V+ R F P+ + +E + D++
Sbjct: 231 GELLHITKVSRLHMAAYLCVASNGVPPSISKRVHLRVQFPPMLSIPNQLEGAYLGQDVIL 290
Query: 585 EHEKKSFP 562
E +++P
Sbjct: 291 ECHTEAYP 298
>AY373570-1|AAR20251.1| 2726|Drosophila melanogaster 309 kDa
centrosomal protein protein.
Length = 2726
Score = 28.7 bits (61), Expect = 9.9
Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Frame = -2
Query: 387 NFDKLDRSNIPDVFLVKKFYGEKSAR-RRARAWKLKHMAE--EFHEGLSSTNDDYNDFLD 217
N K ++ N D+ +K FY +RA +++ +++ +F+E +DDY +
Sbjct: 801 NTGKTEKDNTADIADIKIFYQTHIKELKRAHEDQVRKLSDRIKFYERQQG-DDDYKPATE 859
Query: 216 DLEEDPAFRQNVNIFKDTSRIAVDTDEID 130
E +++ +TS I +D DE++
Sbjct: 860 SPERTCPDQESAGGVANTSLIIIDEDELN 888
>AY060720-1|AAL28268.1| 323|Drosophila melanogaster GH16729p
protein.
Length = 323
Score = 28.7 bits (61), Expect = 9.9
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Frame = -2
Query: 285 KHMAEEFHEGLSSTNDDYNDFLDDLEED---PAFRQNV-NIFKDTSRIAVDTDEIDPSLP 118
KH + L S ND + F DL+ED P F + F+ ++DTD +D +
Sbjct: 63 KHFESQLQRLLESLNDKDDGFERDLKEDFLKPGFESKILKKFEQQKDFSLDTD-LDGEIY 121
Query: 117 RITLAEMLDDLTI-EDVEMSD 58
L ++ L E+VE D
Sbjct: 122 ADQLHSLIQRLNPGENVESGD 142
>AE014134-2381|AAN10840.1| 672|Drosophila melanogaster CG31814-PA
protein.
Length = 672
Score = 28.7 bits (61), Expect = 9.9
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = -2
Query: 765 GSISPICLVHRVTSTIHLIDANNGQVCDVSSTVYWRNPFSPICNPKQLVEYIVMDIDILK 586
G + I V R+ +L A+NG +S V+ R F P+ + +E + D++
Sbjct: 231 GELLHITKVSRLHMAAYLCVASNGVPPSISKRVHLRVQFPPMLSIPNQLEGAYLGQDVIL 290
Query: 585 EHEKKSFP 562
E +++P
Sbjct: 291 ECHTEAYP 298
>AE014134-882|AAF52220.1| 323|Drosophila melanogaster CG4230-PA
protein.
Length = 323
Score = 28.7 bits (61), Expect = 9.9
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Frame = -2
Query: 285 KHMAEEFHEGLSSTNDDYNDFLDDLEED---PAFRQNV-NIFKDTSRIAVDTDEIDPSLP 118
KH + L S ND + F DL+ED P F + F+ ++DTD +D +
Sbjct: 63 KHFESQLQRLLESLNDKDDGFERDLKEDFLKPGFESKILKKFEQQKDFSLDTD-LDGEIY 121
Query: 117 RITLAEMLDDLTI-EDVEMSD 58
L ++ L E+VE D
Sbjct: 122 ADQLHSLIQRLNPGENVESGD 142
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,066,760
Number of Sequences: 53049
Number of extensions: 738194
Number of successful extensions: 1763
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1749
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3777934368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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