Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13g01
(808 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72516-2|CAA96689.2| 513|Caenorhabditis elegans Hypothetical pr... 208 4e-54
Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical pr... 30 1.7
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related... 30 1.7
Z70752-5|CAA94758.1| 901|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z70750-16|CAA94750.1| 901|Caenorhabditis elegans Hypothetical p... 30 2.2
Z68750-6|CAA92970.1| 1035|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z68750-5|CAA92969.1| 1032|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z68300-4|CAA92619.1| 1035|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z68300-3|CAA92618.1| 1032|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z30215-9|CAB54247.1| 1037|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z30215-8|CAA82941.1| 1040|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z29121-4|CAB54514.1| 1037|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z29121-3|CAA82389.1| 1040|Caenorhabditis elegans Hypothetical pr... 29 5.2
U41993-4|AAA83446.4| 574|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z81553-6|CAB04495.1| 388|Caenorhabditis elegans Hypothetical pr... 28 6.8
U39997-1|AAA81096.1| 204|Caenorhabditis elegans Calexcitin prot... 28 9.0
>Z72516-2|CAA96689.2| 513|Caenorhabditis elegans Hypothetical
protein T25G3.3 protein.
Length = 513
Score = 208 bits (508), Expect = 4e-54
Identities = 100/248 (40%), Positives = 156/248 (62%), Gaps = 5/248 (2%)
Frame = -2
Query: 786 KELTQQLGSISPICLVHRVTSTIHLIDANNGQVCDVSSTVYWRNPFSPICNPKQLVEYIV 607
K+ QQ G++S I L RV++ I LID NN Q+ DV +T +WR PF +C PKQL E+ V
Sbjct: 257 KKQAQQYGNMSQIVLCLRVSNVITLIDPNNLQLVDVQATNFWREPFDSLCGPKQLTEFYV 316
Query: 606 MDIDILKEHEKKSFPGQGMVSNKHVIADVWIVKASELGM-DISPVHTRTHLGHILKPGDT 430
+D++ + E+K+ G G VS KH +ADVW+V++ ++GM D + RTH+GH+L PGD
Sbjct: 317 LDVEPVNNFERKA--GHGYVSKKHELADVWLVRSDQVGMSDAQSLSARTHIGHLLSPGDL 374
Query: 429 VLGYNLSESNVNDTNFDKLDRSNIPDVFLVKKFYGEKSARRRARAWKLKHMAEEFH---E 259
V+ +++ NVN+ FD ++ N+PD +V+K + +++ R R WKLK + + +
Sbjct: 375 VMAFDMKNCNVNNATFDAMNIDNVPDAIIVRKVF-DRTRRTAKRQWKLKRLVVDGNIVGN 433
Query: 258 GLSSTNDDYNDFLDDLEEDPAFRQNVNIFKDTSR-IAVDTDEIDPSLPRITLAEMLDDLT 82
+S D++ F++D+EED R+ +NI+KD + VD D+ + TLAEMLDDL
Sbjct: 434 ETASVADEFQGFMEDIEEDALMREKINIYKDAEKGPNVDGDDAEDHPDAPTLAEMLDDLK 493
Query: 81 IEDVEMSD 58
+D EM +
Sbjct: 494 FDDEEMKE 501
>Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical protein
F48F5.1 protein.
Length = 1291
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -3
Query: 209 KRILHSDRMLIFLKILAELLWIQTRSIRHFLVLHWP 102
++ILH+ LK++ + TR++ H+L L+WP
Sbjct: 1096 EKILHNSTEKRVLKVVDKTGKFPTRNVEHYLYLNWP 1131
>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
see also lmb-protein 2 protein.
Length = 1535
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/88 (22%), Positives = 43/88 (48%)
Frame = -2
Query: 627 QLVEYIVMDIDILKEHEKKSFPGQGMVSNKHVIADVWIVKASELGMDISPVHTRTHLGHI 448
QL E I +D+ +E +K + + + + +V VK + P R + +
Sbjct: 1242 QLNESIHRTLDLAEEQKKSADEANNLAAVS--LTNVEAVKIPS----VDPKELRNDVAGV 1295
Query: 447 LKPGDTVLGYNLSESNVNDTNFDKLDRS 364
L+ + ++ ++ E++ ND FD+++RS
Sbjct: 1296 LEESENLVDSSVKENSANDELFDEVNRS 1323
>Z70752-5|CAA94758.1| 901|Caenorhabditis elegans Hypothetical
protein F25B3.1 protein.
Length = 901
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +2
Query: 410 LKLYPRTVSPGFRMCPRCVLVCTGLMSMPNSLALTIQTSAITCLLDTIP 556
LKL R ++P ++C +L+ + L+S N+ ++I +SA ++ +P
Sbjct: 135 LKLKLRPLTPHLKLCSLIILLGSSLISEVNADDVSITSSAAASFVEKVP 183
>Z70750-16|CAA94750.1| 901|Caenorhabditis elegans Hypothetical
protein F25B3.1 protein.
Length = 901
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +2
Query: 410 LKLYPRTVSPGFRMCPRCVLVCTGLMSMPNSLALTIQTSAITCLLDTIP 556
LKL R ++P ++C +L+ + L+S N+ ++I +SA ++ +P
Sbjct: 135 LKLKLRPLTPHLKLCSLIILLGSSLISEVNADDVSITSSAAASFVEKVP 183
>Z68750-6|CAA92970.1| 1035|Caenorhabditis elegans Hypothetical
protein T22B3.2b protein.
Length = 1035
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +1
Query: 523 VSNHVFVRH---HTLSRERFLFMFFQYINIHNNIFHQLFRITY 642
V HV V H L ++ +F++ ++ H NIFH F + Y
Sbjct: 116 VQYHVEVHHPGCRKLDKDEMRIIFWKAVSDHPNIFHNKFALAY 158
>Z68750-5|CAA92969.1| 1032|Caenorhabditis elegans Hypothetical
protein T22B3.2a protein.
Length = 1032
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +1
Query: 523 VSNHVFVRH---HTLSRERFLFMFFQYINIHNNIFHQLFRITY 642
V HV V H L ++ +F++ ++ H NIFH F + Y
Sbjct: 113 VQYHVEVHHPGCRKLDKDEMRIIFWKAVSDHPNIFHNKFALAY 155
>Z68300-4|CAA92619.1| 1035|Caenorhabditis elegans Hypothetical
protein T22B3.2b protein.
Length = 1035
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +1
Query: 523 VSNHVFVRH---HTLSRERFLFMFFQYINIHNNIFHQLFRITY 642
V HV V H L ++ +F++ ++ H NIFH F + Y
Sbjct: 116 VQYHVEVHHPGCRKLDKDEMRIIFWKAVSDHPNIFHNKFALAY 158
>Z68300-3|CAA92618.1| 1032|Caenorhabditis elegans Hypothetical
protein T22B3.2a protein.
Length = 1032
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +1
Query: 523 VSNHVFVRH---HTLSRERFLFMFFQYINIHNNIFHQLFRITY 642
V HV V H L ++ +F++ ++ H NIFH F + Y
Sbjct: 113 VQYHVEVHHPGCRKLDKDEMRIIFWKAVSDHPNIFHNKFALAY 155
>Z30215-9|CAB54247.1| 1037|Caenorhabditis elegans Hypothetical
protein ZK757.3b protein.
Length = 1037
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +1
Query: 523 VSNHVFVRH---HTLSRERFLFMFFQYINIHNNIFHQLFRITY 642
+ HV + H L ++ +F++ ++ H NIFH F + Y
Sbjct: 115 IQYHVEIHHPGCRKLDKDEMRIIFWKAVSDHPNIFHNKFALAY 157
>Z30215-8|CAA82941.1| 1040|Caenorhabditis elegans Hypothetical
protein ZK757.3a protein.
Length = 1040
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +1
Query: 523 VSNHVFVRH---HTLSRERFLFMFFQYINIHNNIFHQLFRITY 642
+ HV + H L ++ +F++ ++ H NIFH F + Y
Sbjct: 118 IQYHVEIHHPGCRKLDKDEMRIIFWKAVSDHPNIFHNKFALAY 160
>Z29121-4|CAB54514.1| 1037|Caenorhabditis elegans Hypothetical
protein ZK757.3b protein.
Length = 1037
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +1
Query: 523 VSNHVFVRH---HTLSRERFLFMFFQYINIHNNIFHQLFRITY 642
+ HV + H L ++ +F++ ++ H NIFH F + Y
Sbjct: 115 IQYHVEIHHPGCRKLDKDEMRIIFWKAVSDHPNIFHNKFALAY 157
>Z29121-3|CAA82389.1| 1040|Caenorhabditis elegans Hypothetical
protein ZK757.3a protein.
Length = 1040
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +1
Query: 523 VSNHVFVRH---HTLSRERFLFMFFQYINIHNNIFHQLFRITY 642
+ HV + H L ++ +F++ ++ H NIFH F + Y
Sbjct: 118 IQYHVEIHHPGCRKLDKDEMRIIFWKAVSDHPNIFHNKFALAY 160
>U41993-4|AAA83446.4| 574|Caenorhabditis elegans Hypothetical
protein F44A2.3 protein.
Length = 574
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = -2
Query: 252 SSTNDDYNDFLDDLEEDPAF-RQNVNIFKDTSRIAVDTDEIDPSLPRITLAEMLDDLTIE 76
+STNDDY D ++ ++ PA NVNI +I++ +++ L+ +L DLT+
Sbjct: 257 ASTNDDYYDDVEKIDGRPAKPSPNVNI----QKISLSREDVINFFNIERLSHILIDLTLL 312
Query: 75 D 73
D
Sbjct: 313 D 313
>Z81553-6|CAB04495.1| 388|Caenorhabditis elegans Hypothetical
protein F56H6.6 protein.
Length = 388
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = -2
Query: 636 NPKQLVEYIVMDIDILKEHEKKSFPGQGMVSNKHVIADVWIVKASELGMDISPVHTR 466
N KQL++ I I + ++ +G S+ H+I D + +S+ + P+ R
Sbjct: 154 NRKQLLKEITSPFQIYPINLMRNVARRGATSDLHLIVDADMTMSSDFARKVKPIANR 210
>U39997-1|AAA81096.1| 204|Caenorhabditis elegans Calexcitin protein
1 protein.
Length = 204
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 445 QDVS*MRPSVYGTNVHA*FAGFNDPDVSNHVF 540
Q V M+P + T H F N DV NH+F
Sbjct: 168 QYVPQMKPETWNTYFHQLFYSTNKSDVGNHLF 199
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,290,523
Number of Sequences: 27780
Number of extensions: 386115
Number of successful extensions: 1202
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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