Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13f23
(136 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce... 26 0.59
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 26 0.78
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 25 1.8
SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual 24 3.2
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 23 4.2
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 23 4.2
SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransfer... 23 5.5
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 23 5.5
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 23 7.3
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce... 23 7.3
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 22 9.7
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy... 22 9.7
>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 170
Score = 26.2 bits (55), Expect = 0.59
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 83 SLPSSEIYRQLVDSRHVSSDSFGVY 9
+L S I+R + S HVSS S GVY
Sbjct: 2 TLLDSSIFRFRLSSLHVSSRSLGVY 26
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.8 bits (54), Expect = 0.78
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 19 KESEETWRESTNWR*ISEEG 78
KE E W + NW+ SEEG
Sbjct: 809 KEELEAWTRAFNWQKASEEG 828
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 24.6 bits (51), Expect = 1.8
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -2
Query: 120 QQNCS-SLCIYSSFSPFLRDLPPVGRFSP 37
Q+ C+ LC YS SP R+LP F P
Sbjct: 495 QRECTICLCEYSEESPLYRELPCHHIFHP 523
>SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 23.8 bits (49), Expect = 3.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 62 YRQLVDSRHVSSDSFGVYVK 3
YRQLVD R ++ D F + K
Sbjct: 34 YRQLVDGRELTLDDFISHAK 53
>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 320
Score = 23.4 bits (48), Expect = 4.2
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -3
Query: 131 VLKDNKTALLSASIQASLPSSEIYRQLVDSRHVSSDSFGVY 9
+LKD LS S+ SLPS Q+ + +S + Y
Sbjct: 59 ILKDVSLKRLSKSLDRSLPSENTIDQISFNHAMSEEDASGY 99
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 23.4 bits (48), Expect = 4.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 45 IYQLAVDLGGRERSLNRCREKSSFV 119
++Q A+ LG RS RC KSSF+
Sbjct: 33 LHQQAL-LGRNGRSSKRCSPKSSFI 56
>SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 209
Score = 23.0 bits (47), Expect = 5.5
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +3
Query: 15 SKGVGRNMARIY 50
SKG+GRN+A Y
Sbjct: 129 SKGIGRNLANAY 140
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 23.0 bits (47), Expect = 5.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -2
Query: 102 LCIYSSFSPFLRDLPPVGRFSPCF 31
LC+ S+F P +R P+ S F
Sbjct: 520 LCVTSAFMPAIRSPSPINFLSSMF 543
>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 314
Score = 22.6 bits (46), Expect = 7.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 134 TVLKDNKTALLSASIQASLPSSEIYRQLVDSR 39
TV +++ + S A L SEIY+QL D R
Sbjct: 163 TVYRNHLLTCETDSALAQLFKSEIYQQLSDFR 194
>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 22.6 bits (46), Expect = 7.3
Identities = 9/37 (24%), Positives = 18/37 (48%)
Frame = +3
Query: 6 YVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSF 116
Y+D + N ++ +L + +E + CR +S F
Sbjct: 144 YIDQDKMHENWKKLQELGILYADKESYRHMCRFESGF 180
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 22.2 bits (45), Expect = 9.7
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +3
Query: 3 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKN 131
FYVD +G ++ R V L + S R E + +LK+
Sbjct: 945 FYVDKEGTVEDILRQVTQKVPLNAEDASRLRLYEVYNHRILKS 987
>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 357
Score = 22.2 bits (45), Expect = 9.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 30 RNMARIYQLAVDLGGRERSL 89
RN+ R+Y+ VD G R L
Sbjct: 101 RNLLRLYETIVDAGVRSELL 120
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 525,384
Number of Sequences: 5004
Number of extensions: 6317
Number of successful extensions: 32
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 25
effective length of database: 2,237,378
effective search space used: 42510182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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