Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13f22
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch...    26   3.8  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    25   6.6  

>SPAC22F8.12c |shf1||small histone ubiquitination factor
           Shf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 275 RTSTS*ASYMNFKVRGSSRRTNSPYHY 355
           RT T  +SY +     +S+  NSPYHY
Sbjct: 44  RTKTPRSSYDSPSSSTNSKEHNSPYHY 70


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +2

Query: 53  KFFTQSKCSARSDKIHSNVDS*TVNNPNKT*IFLFTQLK--ILRC 181
           +FF Q K ++ SD    + D  T N P  + +F++ Q+K  +L C
Sbjct: 227 EFFRQ-KLTSPSDSFFKSDDQSTKNEPFLSVVFIYPQIKPHLLSC 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,005,403
Number of Sequences: 5004
Number of extensions: 35271
Number of successful extensions: 65
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)