Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13f22
         (615 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0105 - 13505786-13505800,13505940-13506043,13506421-135066...    28   5.1  

>11_04_0105 -
           13505786-13505800,13505940-13506043,13506421-13506649,
           13506661-13506954,13507139-13507338,13507531-13507585
          Length = 298

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -2

Query: 200 YRFYTVDNAEFLVA*IKIFTFYSDCSQFSYLHLNEFCHFLHYIYF 66
           Y+ Y V     L+   +IF   SD   F     N FC  L+++++
Sbjct: 253 YKHYEVPQGSLLLGQWRIFMSISDLLVFGQASFNLFCGGLNWVFY 297


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,143,547
Number of Sequences: 37544
Number of extensions: 171573
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)