Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13f21
         (815 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0042 + 317586-317640,318128-318185,318799-319236,320426-32...   189   2e-48
08_02_0134 - 13021294-13021350,13021478-13021658,13022383-130224...    86   3e-17
06_03_1339 + 29445324-29445395,29445487-29445598,29445673-294457...    85   6e-17
05_05_0276 + 23771233-23771268,23773552-23773897,23774425-237745...    31   1.4  

>01_01_0042 +
           317586-317640,318128-318185,318799-319236,320426-320467,
           320468-320648,320838-320867
          Length = 267

 Score =  189 bits (461), Expect = 2e-48
 Identities = 95/194 (48%), Positives = 123/194 (63%), Gaps = 14/194 (7%)
 Frame = -1

Query: 650 MDGNDLSSEITRKGILSQGWTRISQVYQSTLDRWTPHAKTRWVGSALVMAAFIIRIITKQ 471
           MDG   S         ++  T  S+ +Q  LDR TPHA  RW+G+  V A + +R+   Q
Sbjct: 64  MDGAADSGTAGAAAAAAKWRTDASRAFQYYLDRSTPHATGRWIGTLAVAAIYALRVYLVQ 123

Query: 470 GWYIVTYALGIYHLNLFIAFLTPKIDPAMDLDDDENGPALPTRASEEFRPFIRRLPEFKF 291
           G+YIVTY LGIY LNL I FL+P +DP        +GPALPTR S+EF+PFIRRLPEFKF
Sbjct: 124 GFYIVTYGLGIYLLNLLIGFLSPMVDPEAHAAASSDGPALPTRGSDEFKPFIRRLPEFKF 183

Query: 290 WL--------------SVTKSTLIAFCCTFVDAFNIPVFWPILVMYFITLFCITMKRQIK 153
            +              ++TK+ LIAF  TF   F++PVFWPIL+ Y++ LF +TMKRQI 
Sbjct: 184 CIHTILLTFICLAFRYAITKAFLIAFVMTFFSVFDVPVFWPILLCYWVVLFVLTMKRQIV 243

Query: 152 HMIKYRYLPFTHNK 111
           HMIKY+Y+PF+  K
Sbjct: 244 HMIKYKYVPFSVGK 257


>08_02_0134 -
           13021294-13021350,13021478-13021658,13022383-13022433,
           13025134-13025187,13026154-13026248,13026565-13026888
          Length = 253

 Score = 86.2 bits (204), Expect = 3e-17
 Identities = 35/61 (57%), Positives = 46/61 (75%)
 Frame = -1

Query: 284 SVTKSTLIAFCCTFVDAFNIPVFWPILVMYFITLFCITMKRQIKHMIKYRYLPFTHNKPK 105
           S+ K+  IAF  TF   F++PVFWPIL+ Y++ LF +TMKRQI HMIKYRY+PF+  K +
Sbjct: 177 SIVKAFCIAFVLTFFSVFDVPVFWPILLFYWVVLFTVTMKRQILHMIKYRYVPFSFGKQR 236

Query: 104 Y 102
           Y
Sbjct: 237 Y 237



 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 36/64 (56%), Positives = 46/64 (71%)
 Frame = -1

Query: 581 SQVYQSTLDRWTPHAKTRWVGSALVMAAFIIRIITKQGWYIVTYALGIYHLNLFIAFLTP 402
           S+ +Q  LDR TPH   RW+  A V AA+ +R+    G+YIVTYALGIY LNL IAFL+P
Sbjct: 41  SRRFQHLLDRSTPHVGRRWLAFAGVAAAYALRVWFAGGYYIVTYALGIYILNLLIAFLSP 100

Query: 401 KIDP 390
           ++DP
Sbjct: 101 QVDP 104


>06_03_1339 +
           29445324-29445395,29445487-29445598,29445673-29445756,
           29446156-29446182,29446879-29446966,29447070-29447151,
           29447414-29447434,29448412-29448605,29449419-29449560,
           29449805-29449889,29450123-29450250,29450940-29451032,
           29451095-29451327,29453384-29453564,29454122-29454169
          Length = 529

 Score = 85.0 bits (201), Expect = 6e-17
 Identities = 34/61 (55%), Positives = 47/61 (77%)
 Frame = -1

Query: 284 SVTKSTLIAFCCTFVDAFNIPVFWPILVMYFITLFCITMKRQIKHMIKYRYLPFTHNKPK 105
           ++TK+  +AF  TF   F++PVFWPIL+ Y++ LF +TMKRQI HMIKY+Y+PF+  K K
Sbjct: 456 AITKAFCVAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMKRQIVHMIKYKYVPFSIGKQK 515

Query: 104 Y 102
           Y
Sbjct: 516 Y 516


>05_05_0276 +
           23771233-23771268,23773552-23773897,23774425-23774541,
           23774712-23774810,23774949-23775016,23775107-23775181,
           23775386-23775931,23776040-23776092,23776163-23776204,
           23776314-23776458,23776541-23776651,23777496-23777921,
           23778116-23778373
          Length = 773

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 620 TRKGILSQGWTRISQVYQSTLDRWTPHAKTRWVGSALVM 504
           T+      G  RI++ Y+S+   WTP A    +G ALV+
Sbjct: 532 TQNPATQNGSVRINKWYESSARAWTPSAAASSIGQALVV 570


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,923,082
Number of Sequences: 37544
Number of extensions: 402094
Number of successful extensions: 922
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)