Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13f21
(815 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z54281-5|CAA91047.1| 191|Caenorhabditis elegans Hypothetical pr... 224 7e-59
Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical pr... 31 0.99
Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical pr... 31 0.99
AC024831-7|AAY86310.1| 711|Caenorhabditis elegans Hypothetical ... 31 0.99
AC006708-19|AAF60423.3| 588|Caenorhabditis elegans Mtm (myotubu... 31 1.3
AF067940-8|AAC19200.1| 518|Caenorhabditis elegans Hypothetical ... 30 1.7
Z48795-7|CAA88731.1| 347|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z49128-4|CAA88954.1| 541|Caenorhabditis elegans Hypothetical pr... 28 7.0
>Z54281-5|CAA91047.1| 191|Caenorhabditis elegans Hypothetical
protein F46C5.8 protein.
Length = 191
Score = 224 bits (547), Expect = 7e-59
Identities = 99/178 (55%), Positives = 130/178 (73%)
Frame = -1
Query: 617 RKGILSQGWTRISQVYQSTLDRWTPHAKTRWVGSALVMAAFIIRIITKQGWYIVTYALGI 438
R G+ S+ + + YQ LDR TPH RWV + + + F RII QG+YIV YA+GI
Sbjct: 8 RPGVTSRFFHSLEVKYQYYLDRLTPHTAFRWVIALISLVFFASRIILLQGFYIVAYAVGI 67
Query: 437 YHLNLFIAFLTPKIDPAMDLDDDENGPALPTRASEEFRPFIRRLPEFKFWLSVTKSTLIA 258
Y+LNLF+ FLTP IDPA++ +D+++GP LP++ ++EFRPF+RRLPEFKFW S K+TLIA
Sbjct: 68 YYLNLFLLFLTPSIDPALEFEDEDDGPVLPSKTNDEFRPFMRRLPEFKFWHSFMKATLIA 127
Query: 257 FCCTFVDAFNIPVFWPILVMYFITLFCITMKRQIKHMIKYRYLPFTHNKPKYRNADST 84
CTF + F++PVFWPILVMYF L +T+KRQI HMIKYRY+PFT KP+ + T
Sbjct: 128 ITCTFFEFFDVPVFWPILVMYFFILTFLTLKRQIMHMIKYRYIPFTVGKPRMAGKEDT 185
>Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical
protein F45H11.4 protein.
Length = 1243
Score = 31.1 bits (67), Expect = 0.99
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = -1
Query: 266 LIAFCCTFVDAFNIPVFWPILVMYFITLFCITMKRQIKHMIKYRYLPFTHNKP 108
LI C T +F IP FW ++ TL+ + ++ + +++ FT ++P
Sbjct: 728 LILECDTETKSFLIPFFWDFFLITLCTLYAFKTRNLPENFNEAKFIGFTISQP 780
>Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical
protein F45H11.4 protein.
Length = 1243
Score = 31.1 bits (67), Expect = 0.99
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = -1
Query: 266 LIAFCCTFVDAFNIPVFWPILVMYFITLFCITMKRQIKHMIKYRYLPFTHNKP 108
LI C T +F IP FW ++ TL+ + ++ + +++ FT ++P
Sbjct: 728 LILECDTETKSFLIPFFWDFFLITLCTLYAFKTRNLPENFNEAKFIGFTISQP 780
>AC024831-7|AAY86310.1| 711|Caenorhabditis elegans Hypothetical
protein Y55F3C.9 protein.
Length = 711
Score = 31.1 bits (67), Expect = 0.99
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -3
Query: 585 NIAGLSEYIRQMDPSRKDTVGWKCLGHGCIYYPHNY*TRMVYCH-ICVGYLPFKLVHC 415
N EY+ ++ +R + W L I+YP + +M+ H +C+G++ F +VHC
Sbjct: 80 NFCAQREYVPRLIFNRISILIWGSLW---IFYPLIHSDKMLLIHSVCLGFIIFIVVHC 134
>AC006708-19|AAF60423.3| 588|Caenorhabditis elegans Mtm
(myotubularin) family protein 1 protein.
Length = 588
Score = 30.7 bits (66), Expect = 1.3
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = -1
Query: 515 ALVMAAFIIRIITKQGWYIVTYALGIYHLNLFIAFLTPKIDPAMDLDDDENGP---ALPT 345
A V AA R++ K GW I + L + + L ++D D E P +PT
Sbjct: 150 ASVHAAETPRLM-KDGWKIYSAEKEYERLGIPNSRLWKEVDINKDYKFSETYPRTFVIPT 208
Query: 344 RASEEFRPFIRRLPEFK 294
+ EE +PF+++L EF+
Sbjct: 209 VSWEEGKPFVKKLGEFR 225
>AF067940-8|AAC19200.1| 518|Caenorhabditis elegans Hypothetical
protein F36F12.1 protein.
Length = 518
Score = 30.3 bits (65), Expect = 1.7
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = -3
Query: 267 FNSFLLYFCGCFQYSSILAYSSYVFHNIILYYYEETNQAYD-QIQISAIYTQQTKV*KCR 91
F LL + Q+ + +F L YYEE + Y+ QISA+Y Q + +
Sbjct: 255 FTDCLLQYKEAAQFIGFMEIEDLLFPLNTLTYYEEFEREYEGSYQISALYYQVVEQQSVK 314
Query: 90 FYSNSELTTYKQMQVTASSG 31
YS+ E + + A SG
Sbjct: 315 -YSSPENQSLGALLTRAQSG 333
>Z48795-7|CAA88731.1| 347|Caenorhabditis elegans Hypothetical
protein R05H5.1 protein.
Length = 347
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Frame = -3
Query: 273 KHFNSFLLYFCGCFQYSSILAYSSYVFHNIILYYYE----ETNQAYDQIQIS-AIYT 118
K+ + + YFC CF + LA+S ++ +Y Y ET A D I+ S A+Y+
Sbjct: 98 KYVSPWFCYFCHCFMCHA-LAHSQWILLGSFIYRYRVLTGETPTAKDLIRNSVALYS 153
>Z49128-4|CAA88954.1| 541|Caenorhabditis elegans Hypothetical
protein M03C11.4 protein.
Length = 541
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 626 EITRKGILSQGWTRISQVYQSTLDRWTPH 540
E T+ LSQ + R+ + YQ T+DR H
Sbjct: 509 EETKFSTLSQNYDRLMEAYQKTIDRIEQH 537
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,392,312
Number of Sequences: 27780
Number of extensions: 399633
Number of successful extensions: 1074
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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