Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13f20
         (678 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY533564-1|AAS45545.2| 2039|Homo sapiens ankyrin repeat-containi...    30   6.6  
AY373757-1|AAR25662.1| 2062|Homo sapiens ankyrin repeat-containi...    30   6.6  
AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens ...    30   6.6  
AK092124-1|BAC03811.1|  495|Homo sapiens protein ( Homo sapiens ...    30   6.6  
AF317425-1|AAG38609.1| 2062|Homo sapiens GAC-1 protein.                30   6.6  

>AY533564-1|AAS45545.2| 2039|Homo sapiens ankyrin repeat-containing
            cofactor-2 protein.
          Length = 2039

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = -1

Query: 600  VKKHIVNRIRNKNCTXLDVKNYERMKTINCE*NKK*IVNSRHNNII-LYCKKIKLKHIDK 424
            +K+    R+RN+NC  L +K+ E+ K    E   K +  S+ + +   Y K+ + K    
Sbjct: 1079 IKQKEKERLRNRNCLELKIKDKEKTKHTPTESKNKELTRSKSSEVTDAYTKEKQPKDAVS 1138

Query: 423  *SKKRIIVKN*M 388
               + +  KN M
Sbjct: 1139 NRSQSVDTKNVM 1150


>AY373757-1|AAR25662.1| 2062|Homo sapiens ankyrin repeat-containing
            protein protein.
          Length = 2062

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = -1

Query: 600  VKKHIVNRIRNKNCTXLDVKNYERMKTINCE*NKK*IVNSRHNNII-LYCKKIKLKHIDK 424
            +K+    R+RN+NC  L +K+ E+ K    E   K +  S+ + +   Y K+ + K    
Sbjct: 1102 IKQKEKERLRNRNCLELKIKDKEKTKHTPTESKNKELTRSKSSEVTDAYTKEKQPKDAVS 1161

Query: 423  *SKKRIIVKN*M 388
               + +  KN M
Sbjct: 1162 NRSQSVDTKNVM 1173


>AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45488 fis, clone BRTHA2003759. ).
          Length = 130

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +1

Query: 400 YNYSFLTLFINMF*LNFLTVQYYVVMSRVYYLFLILFTVYCLHSFIILNI 549
           Y Y ++ ++I +F   F+ +  YV +    Y++  +FT   L+ FI + I
Sbjct: 6   YVYIYMFMYIFIFIYIFIYIYIYVYVYIYLYIYFYIFTYIYLYIFIYIYI 55


>AK092124-1|BAC03811.1|  495|Homo sapiens protein ( Homo sapiens
           cDNA FLJ34805 fis, clone NT2NE2006478. ).
          Length = 495

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = -1

Query: 600 VKKHIVNRIRNKNCTXLDVKNYERMKTINCE*NKK*IVNSRHNNII-LYCKKIKLKHIDK 424
           +K+    R+RN+NC  L +K+ E+ K    E   K +  S+ + +   Y K+ + K    
Sbjct: 27  IKQKEKERLRNRNCLELKIKDKEKTKHTPTESKNKELTRSKSSEVTDAYTKEKQPKDAVS 86

Query: 423 *SKKRIIVKN*M 388
              + +  KN M
Sbjct: 87  NRSQSVDTKNVM 98


>AF317425-1|AAG38609.1| 2062|Homo sapiens GAC-1 protein.
          Length = 2062

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = -1

Query: 600  VKKHIVNRIRNKNCTXLDVKNYERMKTINCE*NKK*IVNSRHNNII-LYCKKIKLKHIDK 424
            +K+    R+RN+NC  L +K+ E+ K    E   K +  S+ + +   Y K+ + K    
Sbjct: 1102 IKQKEKERLRNRNCLELKIKDKEKTKHTPTESKNKELTRSKSSEVTDAYTKEKQPKDAVS 1161

Query: 423  *SKKRIIVKN*M 388
               + +  KN M
Sbjct: 1162 NRSQSVDTKNVM 1173


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,246,207
Number of Sequences: 237096
Number of extensions: 1194557
Number of successful extensions: 2339
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2335
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7671262118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)