Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13f20
         (678 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113578-1|AAM29583.1|  373|Drosophila melanogaster RH30783p pro...    32   0.63 
AE014134-2987|AAF53717.1|  373|Drosophila melanogaster CG17321-P...    32   0.63 
AY094969-1|AAM11322.1| 1226|Drosophila melanogaster SD08167p pro...    29   4.4  
AE014298-2508|AAF48686.2| 1226|Drosophila melanogaster CG4937-PA...    29   4.4  
AE014298-2507|ABI30987.1| 1510|Drosophila melanogaster CG4937-PB...    29   4.4  
AY058386-1|AAL13615.1|  453|Drosophila melanogaster GH14865p pro...    29   7.7  
AE014134-913|AAF52244.1|  453|Drosophila melanogaster CG14021-PB...    29   7.7  
AE014134-912|AAF52245.1|  453|Drosophila melanogaster CG14021-PA...    29   7.7  

>AY113578-1|AAM29583.1|  373|Drosophila melanogaster RH30783p
           protein.
          Length = 373

 Score = 32.3 bits (70), Expect = 0.63
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +3

Query: 9   ILFLACMPLALTCLILFLSFIH-HLTFFAGWDSR*FDYLVFLSVGVIIVL 155
           ++F A   L +TCL+LFL   H  L F   W     +  ++LSVG+I +L
Sbjct: 147 MVFCALFSLLITCLMLFLDISHIALMFPFNWTK--VNTWMYLSVGLIFIL 194


>AE014134-2987|AAF53717.1|  373|Drosophila melanogaster CG17321-PA
           protein.
          Length = 373

 Score = 32.3 bits (70), Expect = 0.63
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +3

Query: 9   ILFLACMPLALTCLILFLSFIH-HLTFFAGWDSR*FDYLVFLSVGVIIVL 155
           ++F A   L +TCL+LFL   H  L F   W     +  ++LSVG+I +L
Sbjct: 147 MVFCALFSLLITCLMLFLDISHIALMFPFNWTK--VNTWMYLSVGLIFIL 194


>AY094969-1|AAM11322.1| 1226|Drosophila melanogaster SD08167p protein.
          Length = 1226

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 110  LAGVPPGKESKVMDKRKK*YEACQCE 33
            LA V PGKE +  D R K ++  QCE
Sbjct: 1099 LATVTPGKELRFADSRTKTFKTLQCE 1124


>AE014298-2508|AAF48686.2| 1226|Drosophila melanogaster CG4937-PA,
            isoform A protein.
          Length = 1226

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 110  LAGVPPGKESKVMDKRKK*YEACQCE 33
            LA V PGKE +  D R K ++  QCE
Sbjct: 1099 LATVTPGKELRFADSRTKTFKTLQCE 1124


>AE014298-2507|ABI30987.1| 1510|Drosophila melanogaster CG4937-PB,
            isoform B protein.
          Length = 1510

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 110  LAGVPPGKESKVMDKRKK*YEACQCE 33
            LA V PGKE +  D R K ++  QCE
Sbjct: 1383 LATVTPGKELRFADSRTKTFKTLQCE 1408


>AY058386-1|AAL13615.1|  453|Drosophila melanogaster GH14865p
           protein.
          Length = 453

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +2

Query: 137 WGNNCTTYVTVYCNLLLHNVVDY*CYYITFLLNTFDDTVQYNIATIFLNLN 289
           WG+    Y+TV+   L+H ++ Y C  I+ +L      + Y + T F  +N
Sbjct: 279 WGSLLIGYLTVFVTFLIHPLMRYVCRRISGILKLIICDIYY-LMTFFGAVN 328


>AE014134-913|AAF52244.1|  453|Drosophila melanogaster CG14021-PB,
           isoform B protein.
          Length = 453

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +2

Query: 137 WGNNCTTYVTVYCNLLLHNVVDY*CYYITFLLNTFDDTVQYNIATIFLNLN 289
           WG+    Y+TV+   L+H ++ Y C  I+ +L      + Y + T F  +N
Sbjct: 279 WGSLLIGYLTVFVTFLIHPLMRYVCRRISGILKLIICDIYY-LMTFFGAVN 328


>AE014134-912|AAF52245.1|  453|Drosophila melanogaster CG14021-PA,
           isoform A protein.
          Length = 453

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +2

Query: 137 WGNNCTTYVTVYCNLLLHNVVDY*CYYITFLLNTFDDTVQYNIATIFLNLN 289
           WG+    Y+TV+   L+H ++ Y C  I+ +L      + Y + T F  +N
Sbjct: 279 WGSLLIGYLTVFVTFLIHPLMRYVCRRISGILKLIICDIYY-LMTFFGAVN 328


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,891,523
Number of Sequences: 53049
Number of extensions: 334986
Number of successful extensions: 554
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2951284050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)