Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13f20
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016447-1|AAG24019.1|  341|Caenorhabditis elegans Seven tm rece...    33   0.19 
Z46787-5|CAA86743.1|  409|Caenorhabditis elegans Hypothetical pr...    30   1.7  

>AF016447-1|AAG24019.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 31 protein.
          Length = 341

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
 Frame = +2

Query: 263 IATIFLNLNFLTVQLYNV--MSTAYYLFLILFTVSCL 367
           +AT+FLNL F+ + +++   + T Y   LI+F++ CL
Sbjct: 19  VATVFLNLTFIFLTIFHTKRIDTTYKELLIVFSILCL 55


>Z46787-5|CAA86743.1|  409|Caenorhabditis elegans Hypothetical
           protein C16C10.5 protein.
          Length = 409

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 442 LNFLTVQYYVVMSRVYYLFLILFTVYCLHSFII 540
           +  LT+  YV  +R +Y FL  + V+C+ S  I
Sbjct: 156 IGMLTIPVYVCFNRSWYRFLATWLVFCIFSAFI 188


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,463,261
Number of Sequences: 27780
Number of extensions: 197646
Number of successful extensions: 625
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)