Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13f19
(703 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0066 + 25307863-25307871,25308431-25308570,25308712-253087... 35 0.072
11_01_0464 + 3597568-3600244,3600345-3600742 31 1.2
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406... 31 1.2
05_07_0354 - 29507068-29507170,29507406-29507431,29508264-295083... 30 1.5
12_02_0942 - 24653834-24654046,24654346-24654482,24654626-246549... 29 2.7
12_01_0318 - 2425178-2425267,2425830-2426008,2426594-2426654,242... 29 2.7
10_08_0960 - 21853010-21853282,21854078-21854449,21854555-218548... 29 2.7
05_06_0219 + 26479708-26479710,26481045-26481173,26481675-264818... 29 3.6
07_03_0006 + 12268852-12269146,12269362-12269487,12269536-122697... 29 4.7
02_05_0612 + 30348495-30348995,30349679-30350023 28 6.2
11_01_0605 + 4821363-4823246 28 8.3
10_08_0704 - 20018477-20018542,20018693-20018704,20018731-200189... 28 8.3
10_01_0021 - 281130-281224,281758-281842,281916-281971,282408-28... 28 8.3
05_03_0307 + 12027505-12027565,12028300-12028925 28 8.3
02_05_0680 - 30824652-30826010 28 8.3
02_05_0350 - 28179063-28179584,28179674-28180041,28180179-281802... 28 8.3
>05_06_0066 +
25307863-25307871,25308431-25308570,25308712-25308754,
25308994-25310022
Length = 406
Score = 34.7 bits (76), Expect = 0.072
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Frame = -1
Query: 607 KIDDLTQKLTVANADLA--EA-NRSLILFANEMIVARRDAETARQDCENARRET-AQLAN 440
+ID+L KLT +AD+A EA N L+ A E A ++ T +D E+A RE+ A+ A
Sbjct: 244 EIDELRAKLTSKDADIAAVEADNAELMKMAEEASHAVKETATKARDTEHALRESAAREAA 303
Query: 439 RMAD 428
R+A+
Sbjct: 304 RVAE 307
>11_01_0464 + 3597568-3600244,3600345-3600742
Length = 1024
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = -1
Query: 403 PSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSM-NVLNKV 227
PS H+L V ++ N F+ + P +SL++L D F+ +P+S+ N+ N V
Sbjct: 384 PSGLTNLHNLVVIELSGNRFSGVLPDWLGALKSLQKLTVGDNNFTG-LIPSSLFNLTNLV 442
Query: 226 KEAIPRNKFKAK 191
+ NKF +
Sbjct: 443 HLFLYSNKFSGQ 454
>08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,
4066416-4066933,4067435-4067694,4068089-4068594,
4068667-4071319
Length = 2107
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Frame = -1
Query: 577 VANADLAEANRSLILFANEMIVARRDAETARQDCENA---RRETAQLANRMADIAQDVIA 407
+A+ L EAN +N + + D + C NA E L ++A+ Q +IA
Sbjct: 1817 IASGLLEEANLFAPSLSNAYLPSEHDENHIEEKCSNATLLEDEDTYLRQKLANNVQKIIA 1876
Query: 406 KPSNPQLC 383
K S LC
Sbjct: 1877 KGSANNLC 1884
>05_07_0354 -
29507068-29507170,29507406-29507431,29508264-29508301,
29508722-29508825,29509005-29509024,29509251-29509299,
29510319-29510406,29510463-29510562,29510660-29510737,
29512688-29512804,29513718-29513821,29514497-29514569,
29514904-29514981,29515091-29515215,29515278-29515341,
29515439-29515597,29515950-29516048,29516496-29516624,
29517010-29517075,29517160-29517304,29517379-29517500,
29517683-29517838,29517918-29518029,29518891-29519036,
29519148-29519252,29519391-29519540,29519703-29519776,
29519902-29520055,29520142-29520408
Length = 1016
Score = 30.3 bits (65), Expect = 1.5
Identities = 23/101 (22%), Positives = 44/101 (43%)
Frame = -1
Query: 700 KEWLLEEVIPQVLCTGKXAPAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANE 521
K+ L+E V + CT K ++E+DT K+ D+ + ++ I A E
Sbjct: 691 KDLLIEAVALKWSCTQKNMASIELDT------------KIWEMEKDVKKLEKNAIEAAKE 738
Query: 520 MIVARRDAETARQDCENARRETAQLANRMADIAQDVIAKPS 398
+R + +Q NA++ +A D+A+ + P+
Sbjct: 739 YENCKRKTQEHKQQLSNAKQHAESIAMITEDLAKKFLEMPT 779
>12_02_0942 -
24653834-24654046,24654346-24654482,24654626-24654959,
24655067-24655153,24655254-24655580
Length = 365
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/62 (22%), Positives = 29/62 (46%)
Frame = -1
Query: 448 LANRMADIAQDVIAKPSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFS 269
L ++M++++ + N C+S+ V D+ NN + RP + S + + D +
Sbjct: 280 LESKMSNLSPSCLIDKENVHACYSMMVGDMNNNRRSSKRPLQCSDSNEITTTSTYDSVLV 339
Query: 268 SD 263
D
Sbjct: 340 DD 341
>12_01_0318 -
2425178-2425267,2425830-2426008,2426594-2426654,
2426851-2427160,2428514-2428777,2432595-2433865
Length = 724
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 536 FVCQRNDCGSTRR*NGSARLRKRAP 462
FVC R C RR G ARLR+ +P
Sbjct: 430 FVCSRLACALLRRRRGRARLRRASP 454
>10_08_0960 -
21853010-21853282,21854078-21854449,21854555-21854862,
21854946-21855102
Length = 369
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/86 (25%), Positives = 38/86 (44%)
Frame = -1
Query: 664 LCTGKXAPAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETAR 485
L + + A + N++ D T++L A ++ + +L A E ARR E
Sbjct: 132 LLSDELATQFDRCKNEMARMFQDHTERLRRALGEVRRRHYRSLLGAAEAAAARRMRE-KE 190
Query: 484 QDCENARRETAQLANRMADIAQDVIA 407
+ NA R A+L R+A + + A
Sbjct: 191 AEASNAARRGAELEERVARLRAEAAA 216
>05_06_0219 + 26479708-26479710,26481045-26481173,26481675-26481818,
26481936-26482081,26482185-26482341,26482489-26482547,
26482787-26482946,26483020-26483169,26483279-26483415,
26483518-26483664,26483733-26483834,26483917-26483974,
26484084-26484185,26484322-26484379,26484717-26484775,
26486488-26486525,26486688-26486814,26486900-26487067,
26487879-26488010,26488089-26488198,26488273-26488333,
26488761-26488938,26489041-26489246,26489431-26489550,
26489631-26489729,26489968-26490156,26490291-26490430,
26491149-26491316,26491438-26491605,26491764-26491931,
26492250-26492417,26492533-26492700,26492853-26493020,
26493118-26493285,26493471-26493638,26493756-26493920,
26494679-26494850,26495012-26495175,26495296-26495405,
26495481-26495596,26495686-26495766,26495849-26496034,
26496203-26496547,26496637-26496777,26496869-26496916,
26497162-26497242,26497350-26497406,26497495-26497575,
26497675-26497757,26497842-26497968
Length = 2159
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = -1
Query: 601 DDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADI 425
DDLT+K+ VAN + + +L F RQ E RRE + R+ ++
Sbjct: 1038 DDLTKKVEVANENFKQLKDTLKSFEESTKGLETSLMMERQQNEANRREVGEAQQRVEEL 1096
>07_03_0006 +
12268852-12269146,12269362-12269487,12269536-12269753,
12269918-12270292,12270376-12270610,12270698-12270861
Length = 470
Score = 28.7 bits (61), Expect = 4.7
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Frame = -1
Query: 370 VCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVLNKVKEAIPR------ 209
V D GNN F + P K L R ++ N + +V N++K AIP+
Sbjct: 285 VYDNGNNTFRTIFPSKVELQRMVEWGQVNTKFVKAKMEMKERDVGNEIKYAIPKIVDMKL 344
Query: 208 -NKFKAKHNRITLLEDYTREELMNVI 134
++ A H ++ +L+ E ++VI
Sbjct: 345 TKRYDAAHLQVLVLDHSLIPESVDVI 370
>02_05_0612 + 30348495-30348995,30349679-30350023
Length = 281
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +3
Query: 327 CGRRNANSLLPTSHTARLWHSCGLLGLAITSCAMSAMRLASCAVSRRA 470
C R NA R W + +L +A+ + M A LA C+V R+
Sbjct: 231 CFRCNACKASALDTVRRNWRAVAVLNVAVLAILMLAYSLACCSVRDRS 278
>11_01_0605 + 4821363-4823246
Length = 627
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = -1
Query: 403 PSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVLNKV 227
PS+ L SL D+GNNE + P L+RL + + S VP+S+ L ++
Sbjct: 480 PSSISLLQSLITIDLGNNELIGIIPTNIGTFLKLERLDLSK-NYLSGQVPSSVANLERL 537
>10_08_0704 -
20018477-20018542,20018693-20018704,20018731-20018927,
20018928-20018999,20019159-20021289
Length = 825
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = -1
Query: 403 PSNPQLCHSLAVCDVGNNEFAFLRPQKRSLG-RSLKRLGSNDVIFSSDYVPNSMNVLNKV 227
PS+ ++C +L D+GNN F P G SLK L F+ + +P+ ++ L+++
Sbjct: 577 PSSLEMCKALITLDIGNNRFFGGIPPWIGKGLLSLKFLSLKSNNFTGE-IPSELSNLSQL 635
Query: 226 K 224
+
Sbjct: 636 Q 636
>10_01_0021 -
281130-281224,281758-281842,281916-281971,282408-282584,
282686-282805,283004-283096,283548-283668,283772-283804,
284001-284082,286600-286739
Length = 333
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 214 PRNKFKAKHNRITLLEDYTREELMNVIGSTMTDRQIARM 98
P N + HNR ++L++ L N G T RQ+ M
Sbjct: 99 PPNAIQHLHNRQSMLQEVADLNLSNAYGEVCTPRQLVIM 137
>05_03_0307 + 12027505-12027565,12028300-12028925
Length = 228
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/58 (34%), Positives = 25/58 (43%)
Frame = -3
Query: 584 IDGGQRRFGGSQPIAHFVCQRNDCGSTRR*NGSARLRKRAPRNGAAGQPHGGHCARRD 411
+ GG R GG+ V +R + +R SA R A AAG GG AR D
Sbjct: 101 VAGGGHRHGGA------VAKRGEGKGEKRRRSSAHPRSTATTKKAAGAEEGGGAARVD 152
>02_05_0680 - 30824652-30826010
Length = 452
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 478 CENARRETAQLANRMADIAQDVIAKPSNPQ 389
C+N E AN M D +++AKP +PQ
Sbjct: 257 CDNQCLEAMSKANAMYDALVNLVAKPVSPQ 286
>02_05_0350 -
28179063-28179584,28179674-28180041,28180179-28180270,
28180366-28180412
Length = 342
Score = 27.9 bits (59), Expect = 8.3
Identities = 23/90 (25%), Positives = 40/90 (44%)
Frame = -1
Query: 676 IPQVLCTGKXAPAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDA 497
+P V + + A ++ ++ I + ++L A AD + +L A E ARR
Sbjct: 142 MPFVSFSDELAGQMKRQDEELDRFIKEQGEQLRRAMADRVRRHNRALLVAAERSAARRLR 201
Query: 496 ETARQDCENARRETAQLANRMADIAQDVIA 407
E A + E R A+L R+A + + A
Sbjct: 202 EKA-LEAEREARRGAELEERLARLRSEAAA 230
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,190,645
Number of Sequences: 37544
Number of extensions: 401011
Number of successful extensions: 1382
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1379
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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