Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13f17
         (308 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   124   3e-30
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   124   3e-30
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    27   0.64 
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   0.84 
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    25   2.6  
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    25   2.6  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    25   3.4  
SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces ...    24   4.5  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    24   4.5  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    24   5.9  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    23   7.9  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  124 bits (299), Expect = 3e-30
 Identities = 56/82 (68%), Positives = 65/82 (79%)
 Frame = -3

Query: 306 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 127
           ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  HT R ALE ++LK+IDT+SK
Sbjct: 305 ITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASK 364

Query: 126 FGHGRFQTPADKAAFMGTLKKD 61
           FGHGRFQTPA+   F+GTLKKD
Sbjct: 365 FGHGRFQTPAEAKQFLGTLKKD 386


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  124 bits (299), Expect = 3e-30
 Identities = 56/82 (68%), Positives = 65/82 (79%)
 Frame = -3

Query: 306 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 127
           ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  HT R ALE ++LK+IDT+SK
Sbjct: 305 ITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASK 364

Query: 126 FGHGRFQTPADKAAFMGTLKKD 61
           FGHGRFQTPA+   F+GTLKKD
Sbjct: 365 FGHGRFQTPAEAKQFLGTLKKD 386


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 27.1 bits (57), Expect = 0.64
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 149 NSLTPRPSSVMVDSRRRLTRLHSWVHSRRIVFAKKLRL 36
           NS+ PR   +    R+ L  L +  HS+R  F  KL +
Sbjct: 614 NSINPRDKVIWHTRRKELAALKTGAHSQRCDFNYKLEI 651


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 0.84
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 82  HGYTQEGSYSRRSCGYHNPS 23
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 18/75 (24%), Positives = 33/75 (44%)
 Frame = +1

Query: 76  THECSLVSRRLESTMTELGRGVNEFEVDLF*CSPLCMHTQRLSKSNDTLFRSHAATLDHH 255
           THE +L S++  +   E+G   ++ E+  F   P C         +D LF+ H     H 
Sbjct: 212 THEHTLFSKKGLTKHNEVGDQGSDLEITGFKGHPKCEFCNTHFYDDDELFK-HCRE-KHE 269

Query: 256 KVVVYFTIMGETSHR 300
           +  +   + G  +H+
Sbjct: 270 RCYICDQVAGRPTHQ 284


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -1

Query: 59  VFAKKLRLPQPQRG 18
           VFA+KLRLPQ Q G
Sbjct: 311 VFAQKLRLPQLQTG 324


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 19  PRWGCGSRSFFANTILLECTHECSLVSRRLESTM 120
           PRW   SR    NT   + +   SLV  +L+ST+
Sbjct: 618 PRWESSSRDDKTNTSSTQPSQVDSLVPTQLDSTI 651


>SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 116

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 221 FLGPMQQPLIITKSLFTSP 277
           FL   Q+PLIITK  +++P
Sbjct: 13  FLKNPQKPLIITKRFYSTP 31


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -2

Query: 82   HGYTQEGSYSRRSCGYHNPSGAAAQP 5
            +GY Q G       GY  P+G  A P
Sbjct: 1338 YGYNQTGMEGYSEYGYAQPAGNMANP 1363


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 83  SWVHSRRIVFAKKLRL 36
           SWV+SR  +F+K LR+
Sbjct: 293 SWVYSRHYLFSKILRV 308


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1073

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -3

Query: 210  TLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRI 55
            +LR S+ V    +    +NL   DTSS+ G   F     K  F  +  KDR+
Sbjct: 939  SLRDSVAVFQYDSENNSLNLVCSDTSSRLGIDCFYISQKKLLF--SCDKDRL 988


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,333,205
Number of Sequences: 5004
Number of extensions: 24336
Number of successful extensions: 54
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)