Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13f17
(308 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 128 7e-31
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 121 1e-28
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 28 1.3
12_02_1033 - 25552157-25552732,25553050-25553505,25553608-255536... 27 2.3
11_01_0119 - 931934-932359,933409-933564 27 3.0
12_01_0126 - 953586-953637,953890-954554 27 4.0
11_01_0116 - 896184-896849 27 4.0
07_03_0942 + 22773678-22773777,22773869-22774022,22774194-227742... 27 4.0
01_07_0299 + 42594363-42594424,42594516-42594798,42595185-425954... 27 4.0
12_01_0129 - 974295-974720,975721-975876 26 6.9
07_03_0557 + 19447367-19447517,19447630-19447730,19448359-194484... 26 6.9
05_05_0265 - 23680609-23681313 26 6.9
04_03_0960 - 21257219-21257953 26 6.9
07_03_1738 - 29141829-29141989,29142112-29142343,29142751-291427... 25 9.2
04_04_1685 - 35355952-35356141,35357285-35357361 25 9.2
04_04_0520 - 25871932-25872074,25872234-25872294,25873267-258733... 25 9.2
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 128 bits (310), Expect = 7e-31
Identities = 57/80 (71%), Positives = 65/80 (81%)
Frame = -3
Query: 306 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 127
ITPMGGFPHYG V D++MIKGCC+GPKKR++TLR+SL T R ALE+I LKFIDTSSK
Sbjct: 309 ITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSK 368
Query: 126 FGHGRFQTPADKAAFMGTLK 67
FGHGRFQT +K F G LK
Sbjct: 369 FGHGRFQTTDEKQRFFGKLK 388
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 121 bits (292), Expect = 1e-28
Identities = 53/72 (73%), Positives = 61/72 (84%)
Frame = -3
Query: 306 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 127
ITPMGGFPHYG V D++MIKGCC+GPKKR++TLR+SL T R ALE+I LKFIDTSSK
Sbjct: 309 ITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSK 368
Query: 126 FGHGRFQTPADK 91
FGHGRFQT +K
Sbjct: 369 FGHGRFQTTDEK 380
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 28.3 bits (60), Expect = 1.3
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -3
Query: 303 TPMGGFPHYGEVNNDFVMIKGCCMG 229
+P+GG P YG ++ D + C +G
Sbjct: 1378 SPIGGIPRYGRLSGDVYVCNQCTIG 1402
>12_02_1033 -
25552157-25552732,25553050-25553505,25553608-25553659,
25553758-25553831,25553968-25554017,25554106-25554187,
25554265-25554314,25554405-25554447,25554544-25554624,
25554723-25554768,25554860-25554906,25554998-25555063,
25555334-25555400,25555528-25555613
Length = 591
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -1
Query: 131 PSSVMVDSRRRLTRLHSWVHSRRIVFAKKLRLPQPQR 21
PS V+ +RRR+ R +S + R + F+K P P+R
Sbjct: 292 PSDVVDSARRRMARRNSLGNERTVTFSK----PSPER 324
>11_01_0119 - 931934-932359,933409-933564
Length = 193
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 91 GCIHGYTQEGSYSRRSCGYHNPSG 20
G + G++ EGS+ RRSC N G
Sbjct: 110 GHVPGFSIEGSFRRRSCKIRNSVG 133
>12_01_0126 - 953586-953637,953890-954554
Length = 238
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 76 YTQEGSYSRRSCGYHNPSGAA 14
Y EGSY RRSC + G A
Sbjct: 149 YVVEGSYGRRSCAVRDARGDA 169
>11_01_0116 - 896184-896849
Length = 221
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 76 YTQEGSYSRRSCGYHNPSGAA 14
Y EGSY RRSC + G A
Sbjct: 149 YVVEGSYGRRSCAVRDARGDA 169
>07_03_0942 +
22773678-22773777,22773869-22774022,22774194-22774265,
22774353-22774424,22774599-22774667,22774754-22774926,
22775457-22775629,22775654-22775827,22775987-22776113,
22776184-22776252,22776432-22776621,22776789-22776921,
22777091-22777441
Length = 618
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 82 HGYTQEGSYSRRSCGYHNPSGAAAQ 8
HG + +S C YH+P GA+ Q
Sbjct: 147 HGLSISVEFSYGGCAYHSPPGASNQ 171
>01_07_0299 + 42594363-42594424,42594516-42594798,42595185-42595409,
42596395-42596592,42596871-42597325,42597824-42597962,
42598035-42598113,42598686-42598924,42599058-42599362,
42599449-42599560,42599640-42599804,42599933-42600071,
42600111-42600219,42600733-42600823,42600940-42601064,
42601148-42601297,42601383-42601455,42601630-42601810,
42601888-42602046,42602939-42603085,42603176-42603220,
42603305-42603382,42603565-42603719,42603875-42603927,
42604012-42604090,42604271-42604357
Length = 1310
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -3
Query: 144 IDTSSKFGHGRFQTPADKAAFMGTLKKDRIREEAAATT 31
++ + +F H R +T A+ AF G +++ EA TT
Sbjct: 954 LEGTFRFMHSRLRTHAESIAFFGGGSREKAMVEAKFTT 991
>12_01_0129 - 974295-974720,975721-975876
Length = 193
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 91 GCIHGYTQEGSYSRRSCGYHNPSG 20
G + ++ EGS+ RRSC N G
Sbjct: 110 GHVPAFSIEGSFKRRSCKIRNSGG 133
>07_03_0557 +
19447367-19447517,19447630-19447730,19448359-19448480,
19448725-19448912,19449000-19449178,19449370-19449711,
19449795-19449859,19450259-19450317,19450486-19450573,
19450653-19450722,19450759-19450992,19451072-19451411,
19451643-19451691,19452690-19452780,19453077-19453442
Length = 814
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 255 VMIKGCCMGPKKRIITLRKSLRVHTKRAALEKIN 154
+ + CC+ KKR ++SL KRA+++ N
Sbjct: 278 IQVINCCIARKKRRKAAKESLDSLLKRASIDNSN 311
>05_05_0265 - 23680609-23681313
Length = 234
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 79 GYTQEGSYSRRSCGYHN 29
GY EGSY RRSC ++
Sbjct: 162 GYEIEGSYLRRSCAVYD 178
>04_03_0960 - 21257219-21257953
Length = 244
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = -3
Query: 123 GHGRFQTPADKAAFMGTLKKDRIREEAAATTTPAGLLRS 7
G R P D AA D AAA++ PA LL S
Sbjct: 112 GRARLNFPEDAAAADERRATDAAAAAAAASSAPAALLES 150
>07_03_1738 -
29141829-29141989,29142112-29142343,29142751-29142792,
29143312-29143410,29143575-29143667,29143742-29143876,
29144251-29144290,29144475-29144844,29146575-29146650
Length = 415
Score = 25.4 bits (53), Expect = 9.2
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -2
Query: 88 CIHGYTQEGSYSRRSCGYHNPS 23
C+HG+ GS+ ++ NPS
Sbjct: 179 CLHGFRTSGSFLKKQISKWNPS 200
>04_04_1685 - 35355952-35356141,35357285-35357361
Length = 88
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -2
Query: 40 GYHNPSGAAAQP 5
GYHNP+GAA P
Sbjct: 67 GYHNPTGAAPLP 78
>04_04_0520 -
25871932-25872074,25872234-25872294,25873267-25873389,
25873465-25873531,25873710-25873780,25873853-25874004,
25874082-25874158,25874323-25874435,25874503-25874598,
25874703-25874734,25874838-25874884,25875015-25875068,
25875212-25875289,25875607-25875698
Length = 401
Score = 25.4 bits (53), Expect = 9.2
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Frame = -3
Query: 228 PKKRIITLRKSLRVHTKRAALEKINLKFI-----DTSSKFGHGRFQTPADKAAFMGTLKK 64
P I+ K L ++ + A+ K+N+++I S + Q P ++MG + K
Sbjct: 62 PGNAILAEEKHLPMYNELAS--KVNVEYIAGGSTQNSIRVAQWMLQIPG-ATSYMGCIGK 118
Query: 63 DRIREEAAATTTPAGL 16
D+ EE AGL
Sbjct: 119 DKFGEEMKKDAQTAGL 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,641,383
Number of Sequences: 37544
Number of extensions: 187368
Number of successful extensions: 504
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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