Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13f17
         (308 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-10|CAJ14161.1|  519|Anopheles gambiae Sply, Sphingosine...    27   0.21 
AY330177-1|AAQ16283.1|  166|Anopheles gambiae odorant-binding pr...    25   0.85 
AJ618926-1|CAF02005.1|  315|Anopheles gambiae odorant-binding pr...    25   0.85 
DQ182017-1|ABA56309.1|  383|Anopheles gambiae G(alpha)s protein.       24   1.5  
AF080563-1|AAC31943.1|  310|Anopheles gambiae Ultrabithorax home...    24   1.5  
AF080562-1|AAC31942.1|  327|Anopheles gambiae Ultrabithorax home...    24   1.5  
AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    23   3.4  
AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.           23   3.4  
Z22930-6|CAA80518.1|  277|Anopheles gambiae trypsin protein.           22   6.0  
Z18890-1|CAA79328.1|  277|Anopheles gambiae trypsin protein.           22   6.0  
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           22   6.0  
AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbona...    22   6.0  
M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.              21   7.9  

>CR954257-10|CAJ14161.1|  519|Anopheles gambiae Sply,
           Sphingosine-phosphate lyase protein.
          Length = 519

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -3

Query: 225 KKRIITLRKSLRVHTKR--AALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 64
           KK++  L + +    +R  A +EKIN  FI   S+ G+   + P D       LKK
Sbjct: 53  KKKVFKLARLIPAVRRRVDAEIEKINAGFIKDISQTGNYYTELPHDSMGQAEILKK 108


>AY330177-1|AAQ16283.1|  166|Anopheles gambiae odorant-binding
           protein AgamOBP50 protein.
          Length = 166

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 168 LEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREEA 43
           ++ IN++ I T+       +Q    KA      +KD+IREEA
Sbjct: 76  VDDINVEQISTNQAGYDQAYQEAIAKAVTACMAQKDKIREEA 117


>AJ618926-1|CAF02005.1|  315|Anopheles gambiae odorant-binding
           protein OBPjj6b protein.
          Length = 315

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 168 LEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREEA 43
           ++ IN++ I T+       +Q    KA      +KD+IREEA
Sbjct: 225 VDDINVEQISTNQAGYDQAYQEAIAKAVTACMAQKDKIREEA 266


>DQ182017-1|ABA56309.1|  383|Anopheles gambiae G(alpha)s protein.
          Length = 383

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = -3

Query: 165 EKINLKFIDTSSKFGH-GRFQTPADKAAFMG 76
           EKI       S  FG   R+QTPAD    MG
Sbjct: 288 EKIKAGKSKLSDYFGEFNRYQTPADAVCEMG 318


>AF080563-1|AAC31943.1|  310|Anopheles gambiae Ultrabithorax
           homeotic protein IVa protein.
          Length = 310

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -2

Query: 145 H*HLVQVRSWSIPDAG*QG-CIHGYTQEGSYSRRSCGYHNPSG 20
           H H  +    S  DA  Q  C   Y  EGSYS + CG    SG
Sbjct: 56  HLHQTRTAQESPYDASIQAACKQIY--EGSYSSKDCGTKGTSG 96


>AF080562-1|AAC31942.1|  327|Anopheles gambiae Ultrabithorax
           homeotic protein IIa protein.
          Length = 327

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -2

Query: 145 H*HLVQVRSWSIPDAG*QG-CIHGYTQEGSYSRRSCGYHNPSG 20
           H H  +    S  DA  Q  C   Y  EGSYS + CG    SG
Sbjct: 56  HLHQTRTAQESPYDASIQAACKQIY--EGSYSSKDCGTKGTSG 96


>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = -2

Query: 88  CIHGYTQEGSYSRRSCGYHNPSGAAAQPK 2
           C   + Q+    R    YHNP   A  PK
Sbjct: 388 CAQTFRQKQLLKRHMNYYHNPDYVAPTPK 416


>AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.
          Length = 897

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -1

Query: 152 SNSLTPRPSSVMVDSRRRLTRLHSWVHSRRIVFAKKLRLPQPQRGCC 12
           +N++   P  +M DS   L +  S +  +     ++L+L QPQ G C
Sbjct: 446 TNNIPDLPQGLM-DSADLLPKYRSDLVGKIRALRQELQLLQPQSGHC 491


>Z22930-6|CAA80518.1|  277|Anopheles gambiae trypsin protein.
          Length = 277

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/34 (23%), Positives = 16/34 (47%)
 Frame = -2

Query: 199 VSACAYKEGCTRKDQPQIH*HLVQVRSWSIPDAG 98
           V   ++  GC +   P ++  +  VR W   ++G
Sbjct: 243 VGVVSWGYGCAQPGYPGVYGRVASVRDWVRENSG 276


>Z18890-1|CAA79328.1|  277|Anopheles gambiae trypsin protein.
          Length = 277

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/34 (23%), Positives = 16/34 (47%)
 Frame = -2

Query: 199 VSACAYKEGCTRKDQPQIH*HLVQVRSWSIPDAG 98
           V   ++  GC +   P ++  +  VR W   ++G
Sbjct: 243 VGVVSWGYGCAQPGYPGVYGRVASVRDWVRENSG 276


>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 140  TPRPSSVMVDSRRRLTRLHSWVHSRRIV 57
            TPR ++ + D RRR+ R   W   +R++
Sbjct: 1139 TPREAARLEDGRRRVAR---WRERQRMI 1163


>AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbonate
           anion exchanger protein.
          Length = 1102

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = -1

Query: 182 QRGLH*KRSTSNSLTPRPSSVMVDSRRRLTRLHSWVHSRRIVFAKKL 42
           QRG +    T  ++T  PS+V +        L +  H     F +K+
Sbjct: 293 QRGHYLALPTGENMTQSPSNVSMPRNASSGELQNGEHKTNTHFMRKI 339


>M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.
          Length = 613

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 68  LSVPMNAALSAGVWNRP*PNLDEVSMNLRLIFSSAA 175
           ++VP  +   AG  +   P+L E++ +L+L+    A
Sbjct: 115 MTVPATSTPKAGKCSSAEPSLSEMNESLKLLAMQVA 150


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 359,362
Number of Sequences: 2352
Number of extensions: 7163
Number of successful extensions: 22
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 56
effective length of database: 432,267
effective search space used: 19884282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)