Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13f17
(308 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016835-1|AAC26144.1| 416|Drosophila melanogaster ribosomal pr... 175 9e-45
AE014297-1265|AAF54609.1| 403|Drosophila melanogaster CG4863-PE... 175 9e-45
AE014297-1264|AAN13496.1| 403|Drosophila melanogaster CG4863-PB... 175 9e-45
AE014297-1262|AAF54610.2| 416|Drosophila melanogaster CG4863-PA... 175 9e-45
BT011339-1|AAR96131.1| 465|Drosophila melanogaster RH62603p pro... 168 1e-42
BT025914-1|ABG02158.1| 196|Drosophila melanogaster IP08472p pro... 28 2.7
BT016040-1|AAV36925.1| 671|Drosophila melanogaster LP22276p pro... 28 2.7
AY122202-1|AAM52714.1| 585|Drosophila melanogaster LD47517p pro... 28 2.7
AE014297-323|AAN13256.1| 639|Drosophila melanogaster CG2182-PB,... 28 2.7
AE014297-322|AAF51975.3| 671|Drosophila melanogaster CG2182-PA,... 28 2.7
AE014298-1060|AAN09214.1| 177|Drosophila melanogaster CG32718-P... 27 3.6
BT025191-1|ABF17882.1| 931|Drosophila melanogaster FI01302p pro... 27 4.7
BT001257-1|AAN71013.1| 930|Drosophila melanogaster AT01735p pro... 27 4.7
AY119571-1|AAM50225.1| 512|Drosophila melanogaster LD02329p pro... 27 4.7
AE014297-2007|AAF55168.1| 931|Drosophila melanogaster CG4913-PA... 27 4.7
>AF016835-1|AAC26144.1| 416|Drosophila melanogaster ribosomal
protein L3 protein.
Length = 416
Score = 175 bits (426), Expect = 9e-45
Identities = 82/102 (80%), Positives = 88/102 (86%)
Frame = -3
Query: 306 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 127
ITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL HTKR+ALE+I LKFIDTSSK
Sbjct: 314 ITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSK 373
Query: 126 FGHGRFQTPADKAAFMGTLKKDRIREEAAATTTPAGLLRSLS 1
GHGRFQTPADK AFMG LKKDR++EEAAATT A + S
Sbjct: 374 MGHGRFQTPADKLAFMGPLKKDRLKEEAAATTAAAAAATTTS 415
>AE014297-1265|AAF54609.1| 403|Drosophila melanogaster CG4863-PE,
isoform E protein.
Length = 403
Score = 175 bits (426), Expect = 9e-45
Identities = 82/102 (80%), Positives = 88/102 (86%)
Frame = -3
Query: 306 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 127
ITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL HTKR+ALE+I LKFIDTSSK
Sbjct: 301 ITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSK 360
Query: 126 FGHGRFQTPADKAAFMGTLKKDRIREEAAATTTPAGLLRSLS 1
GHGRFQTPADK AFMG LKKDR++EEAAATT A + S
Sbjct: 361 MGHGRFQTPADKLAFMGPLKKDRLKEEAAATTAAAAAATTTS 402
>AE014297-1264|AAN13496.1| 403|Drosophila melanogaster CG4863-PB,
isoform B protein.
Length = 403
Score = 175 bits (426), Expect = 9e-45
Identities = 82/102 (80%), Positives = 88/102 (86%)
Frame = -3
Query: 306 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 127
ITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL HTKR+ALE+I LKFIDTSSK
Sbjct: 301 ITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSK 360
Query: 126 FGHGRFQTPADKAAFMGTLKKDRIREEAAATTTPAGLLRSLS 1
GHGRFQTPADK AFMG LKKDR++EEAAATT A + S
Sbjct: 361 MGHGRFQTPADKLAFMGPLKKDRLKEEAAATTAAAAAATTTS 402
>AE014297-1262|AAF54610.2| 416|Drosophila melanogaster CG4863-PA,
isoform A protein.
Length = 416
Score = 175 bits (426), Expect = 9e-45
Identities = 82/102 (80%), Positives = 88/102 (86%)
Frame = -3
Query: 306 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 127
ITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL HTKR+ALE+I LKFIDTSSK
Sbjct: 314 ITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSK 373
Query: 126 FGHGRFQTPADKAAFMGTLKKDRIREEAAATTTPAGLLRSLS 1
GHGRFQTPADK AFMG LKKDR++EEAAATT A + S
Sbjct: 374 MGHGRFQTPADKLAFMGPLKKDRLKEEAAATTAAAAAATTTS 415
>BT011339-1|AAR96131.1| 465|Drosophila melanogaster RH62603p
protein.
Length = 465
Score = 168 bits (408), Expect = 1e-42
Identities = 77/89 (86%), Positives = 82/89 (92%)
Frame = -3
Query: 306 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 127
ITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL HTKR+ALE+I LKFIDTSSK
Sbjct: 325 ITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSK 384
Query: 126 FGHGRFQTPADKAAFMGTLKKDRIREEAA 40
GHGRFQTPADK AFMG LKKDR++EEAA
Sbjct: 385 MGHGRFQTPADKLAFMGPLKKDRLKEEAA 413
>BT025914-1|ABG02158.1| 196|Drosophila melanogaster IP08472p
protein.
Length = 196
Score = 27.9 bits (59), Expect = 2.7
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 169 CSP-LCMHTQRLSKSNDTLFRSHAATLDH 252
CS LC H S+D LF SH + LDH
Sbjct: 88 CSDGLCNHDVHDEDSDDLLFYSHQSQLDH 116
>BT016040-1|AAV36925.1| 671|Drosophila melanogaster LP22276p
protein.
Length = 671
Score = 27.9 bits (59), Expect = 2.7
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 169 CSP-LCMHTQRLSKSNDTLFRSHAATLDH 252
CS LC H S+D LF SH + LDH
Sbjct: 563 CSDGLCNHDVHDEDSDDLLFYSHQSQLDH 591
>AY122202-1|AAM52714.1| 585|Drosophila melanogaster LD47517p
protein.
Length = 585
Score = 27.9 bits (59), Expect = 2.7
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 169 CSP-LCMHTQRLSKSNDTLFRSHAATLDH 252
CS LC H S+D LF SH + LDH
Sbjct: 477 CSDGLCNHDVHDEDSDDLLFYSHQSQLDH 505
>AE014297-323|AAN13256.1| 639|Drosophila melanogaster CG2182-PB,
isoform B protein.
Length = 639
Score = 27.9 bits (59), Expect = 2.7
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 169 CSP-LCMHTQRLSKSNDTLFRSHAATLDH 252
CS LC H S+D LF SH + LDH
Sbjct: 531 CSDGLCNHDVHDEDSDDLLFYSHQSQLDH 559
>AE014297-322|AAF51975.3| 671|Drosophila melanogaster CG2182-PA,
isoform A protein.
Length = 671
Score = 27.9 bits (59), Expect = 2.7
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 169 CSP-LCMHTQRLSKSNDTLFRSHAATLDH 252
CS LC H S+D LF SH + LDH
Sbjct: 563 CSDGLCNHDVHDEDSDDLLFYSHQSQLDH 591
>AE014298-1060|AAN09214.1| 177|Drosophila melanogaster CG32718-PA
protein.
Length = 177
Score = 27.5 bits (58), Expect = 3.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 230 PMQQPLIITKSLFTSP*WGKPPIGV 304
P+ PL I LF + WGKP +GV
Sbjct: 9 PIWTPLFILFLLFLAGVWGKPSLGV 33
>BT025191-1|ABF17882.1| 931|Drosophila melanogaster FI01302p
protein.
Length = 931
Score = 27.1 bits (57), Expect = 4.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 135 SSKFGHGRFQTPADKAAFMGTLKKDRIREEAAATTTPAGLL 13
SSK G G+ + +K+ + K+R RE+ + TT A L
Sbjct: 284 SSKSGDGKHERDKEKSKKDKSRDKEREREQGSGNTTSANAL 324
>BT001257-1|AAN71013.1| 930|Drosophila melanogaster AT01735p
protein.
Length = 930
Score = 27.1 bits (57), Expect = 4.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 135 SSKFGHGRFQTPADKAAFMGTLKKDRIREEAAATTTPAGLL 13
SSK G G+ + +K+ + K+R RE+ + TT A L
Sbjct: 284 SSKSGDGKHERDKEKSKKDKSRDKEREREQGSGNTTSANAL 324
>AY119571-1|AAM50225.1| 512|Drosophila melanogaster LD02329p
protein.
Length = 512
Score = 27.1 bits (57), Expect = 4.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 135 SSKFGHGRFQTPADKAAFMGTLKKDRIREEAAATTTPAGLL 13
SSK G G+ + +K+ + K+R RE+ + TT A L
Sbjct: 284 SSKSGDGKHERDKEKSKKDKSRDKEREREQGSGNTTSANAL 324
>AE014297-2007|AAF55168.1| 931|Drosophila melanogaster CG4913-PA
protein.
Length = 931
Score = 27.1 bits (57), Expect = 4.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 135 SSKFGHGRFQTPADKAAFMGTLKKDRIREEAAATTTPAGLL 13
SSK G G+ + +K+ + K+R RE+ + TT A L
Sbjct: 284 SSKSGDGKHERDKEKSKKDKSRDKEREREQGSGNTTSANAL 324
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,533,567
Number of Sequences: 53049
Number of extensions: 300615
Number of successful extensions: 1016
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 589756776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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