Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13f17
(308 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal prote... 131 1e-31
Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal prote... 131 1e-31
Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical p... 131 1e-31
Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical p... 131 1e-31
Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical p... 131 1e-31
Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical pr... 131 1e-31
Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical pr... 131 1e-31
Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical pr... 131 1e-31
U41543-8|AAB37025.2| 393|Caenorhabditis elegans Hypothetical pr... 27 2.0
U41110-4|AAA82419.1| 575|Caenorhabditis elegans Hypothetical pr... 27 2.0
Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical pr... 25 8.1
Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical pr... 25 8.1
Z32679-5|CAA83594.2| 408|Caenorhabditis elegans Hypothetical pr... 25 8.1
X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy ch... 25 8.1
M37235-1|AAA28122.1| 273|Caenorhabditis elegans myosin II protein. 25 8.1
>Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 131 bits (316), Expect = 1e-31
Identities = 61/89 (68%), Positives = 71/89 (79%)
Frame = -3
Query: 306 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 127
ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK
Sbjct: 311 ITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSK 370
Query: 126 FGHGRFQTPADKAAFMGTLKKDRIREEAA 40
GHGRFQT A+K AFMG LK+D + E A
Sbjct: 371 TGHGRFQTTAEKRAFMGKLKRDFLAEAEA 399
>Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 131 bits (316), Expect = 1e-31
Identities = 61/89 (68%), Positives = 71/89 (79%)
Frame = -3
Query: 306 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 127
ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK
Sbjct: 311 ITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSK 370
Query: 126 FGHGRFQTPADKAAFMGTLKKDRIREEAA 40
GHGRFQT A+K AFMG LK+D + E A
Sbjct: 371 TGHGRFQTTAEKRAFMGKLKRDFLAEAEA 399
>Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 131 bits (316), Expect = 1e-31
Identities = 61/89 (68%), Positives = 71/89 (79%)
Frame = -3
Query: 306 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 127
ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK
Sbjct: 213 ITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSK 272
Query: 126 FGHGRFQTPADKAAFMGTLKKDRIREEAA 40
GHGRFQT A+K AFMG LK+D + E A
Sbjct: 273 TGHGRFQTTAEKRAFMGKLKRDFLAEAEA 301
>Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 131 bits (316), Expect = 1e-31
Identities = 61/89 (68%), Positives = 71/89 (79%)
Frame = -3
Query: 306 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 127
ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK
Sbjct: 263 ITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSK 322
Query: 126 FGHGRFQTPADKAAFMGTLKKDRIREEAA 40
GHGRFQT A+K AFMG LK+D + E A
Sbjct: 323 TGHGRFQTTAEKRAFMGKLKRDFLAEAEA 351
>Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 131 bits (316), Expect = 1e-31
Identities = 61/89 (68%), Positives = 71/89 (79%)
Frame = -3
Query: 306 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 127
ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK
Sbjct: 311 ITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSK 370
Query: 126 FGHGRFQTPADKAAFMGTLKKDRIREEAA 40
GHGRFQT A+K AFMG LK+D + E A
Sbjct: 371 TGHGRFQTTAEKRAFMGKLKRDFLAEAEA 399
>Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 131 bits (316), Expect = 1e-31
Identities = 61/89 (68%), Positives = 71/89 (79%)
Frame = -3
Query: 306 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 127
ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK
Sbjct: 213 ITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSK 272
Query: 126 FGHGRFQTPADKAAFMGTLKKDRIREEAA 40
GHGRFQT A+K AFMG LK+D + E A
Sbjct: 273 TGHGRFQTTAEKRAFMGKLKRDFLAEAEA 301
>Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 131 bits (316), Expect = 1e-31
Identities = 61/89 (68%), Positives = 71/89 (79%)
Frame = -3
Query: 306 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 127
ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK
Sbjct: 263 ITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSK 322
Query: 126 FGHGRFQTPADKAAFMGTLKKDRIREEAA 40
GHGRFQT A+K AFMG LK+D + E A
Sbjct: 323 TGHGRFQTTAEKRAFMGKLKRDFLAEAEA 351
>Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 131 bits (316), Expect = 1e-31
Identities = 61/89 (68%), Positives = 71/89 (79%)
Frame = -3
Query: 306 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 127
ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK
Sbjct: 311 ITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSK 370
Query: 126 FGHGRFQTPADKAAFMGTLKKDRIREEAA 40
GHGRFQT A+K AFMG LK+D + E A
Sbjct: 371 TGHGRFQTTAEKRAFMGKLKRDFLAEAEA 399
>U41543-8|AAB37025.2| 393|Caenorhabditis elegans Hypothetical
protein F46H5.8 protein.
Length = 393
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 152 SNSLTPRPSSVMVDSRRRLTRLHSWVHSRRIVFAKKLRL 36
SN L P PS++ + + L HS V +++I+ RL
Sbjct: 266 SNRLLPMPSNMGISNAEGLAHFHSLVANKQILSENMYRL 304
>U41110-4|AAA82419.1| 575|Caenorhabditis elegans Hypothetical
protein ZK682.5 protein.
Length = 575
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -1
Query: 152 SNSLTPRPSSVMVDSRRRLTRLHSWVHS 69
+NSLT PSS +V+ R LT L+ ++S
Sbjct: 195 TNSLTSIPSSALVNQRNTLTNLNLGLNS 222
>Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 76 THECSLVSRRLESTMTELGRGVNEFEVDL 162
TH S RRLE EL RG++E E L
Sbjct: 1539 THALSKNLRRLEMEKEELQRGLDEAEAAL 1567
>Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 76 THECSLVSRRLESTMTELGRGVNEFEVDL 162
TH S RRLE EL RG++E E L
Sbjct: 1539 THALSKNLRRLEMEKEELQRGLDEAEAAL 1567
>Z32679-5|CAA83594.2| 408|Caenorhabditis elegans Hypothetical
protein C05B5.6 protein.
Length = 408
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +1
Query: 109 ESTMTELGRGV-NEF--EVDLF*CSPLCMHTQRLSKSNDTLFRSH 234
++T LG G+ +EF +D F C +RLSK++ LFR +
Sbjct: 288 QATSLSLGSGMFSEFFKHIDHFKSLKFCFFGKRLSKNHIELFRDN 332
>X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy chain 2
protein.
Length = 1947
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 76 THECSLVSRRLESTMTELGRGVNEFEVDL 162
TH S RRLE EL RG++E E L
Sbjct: 1539 THALSKNLRRLEMEKEELQRGLDEAEAAL 1567
>M37235-1|AAA28122.1| 273|Caenorhabditis elegans myosin II protein.
Length = 273
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 76 THECSLVSRRLESTMTELGRGVNEFEVDL 162
TH S RRLE EL RG++E E L
Sbjct: 39 THALSKNLRRLEMEKEELQRGLDEAEAAL 67
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,575,981
Number of Sequences: 27780
Number of extensions: 144540
Number of successful extensions: 375
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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