Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13f17
         (308 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   2.6  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    20   5.9  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    20   5.9  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    20   5.9  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              20   7.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    20   7.8  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 176 LFVCTRRDFLRVMIRFL 226
           ++ C  RDF R  +R L
Sbjct: 389 IYACWSRDFRRAFVRIL 405


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 82  HGYTQEGSYSRRSC 41
           HG T   S++R SC
Sbjct: 76  HGLTNTASHTRLSC 89


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 82  HGYTQEGSYSRRSC 41
           HG T   S++R SC
Sbjct: 81  HGLTNTASHTRLSC 94


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 82  HGYTQEGSYSRRSC 41
           HG T   S++R SC
Sbjct: 81  HGLTNTASHTRLSC 94


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 9/44 (20%), Positives = 20/44 (45%)
 Frame = +1

Query: 139 VNEFEVDLF*CSPLCMHTQRLSKSNDTLFRSHAATLDHHKVVVY 270
           + EF++ L    P+C     + +  +  FR     ++  KV ++
Sbjct: 19  LEEFQIGLRAVVPICRIETSIDQQKEDDFRDGNIDVEDEKVQLF 62


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = -2

Query: 94  QGCIHGYTQEGSYSRRSCGYH 32
           Q C H  T +G   R   G H
Sbjct: 568 QACSHHLTHKGKPIRMRIGIH 588


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,179
Number of Sequences: 438
Number of extensions: 1497
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)