Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13f09
(180 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41481 Cluster: P18 protein; n=12; Nucleopolyhedrovirus... 124 4e-28
UniRef50_Q0N420 Cluster: Ac93-like protein; n=3; Nucleopolyhedro... 67 6e-11
UniRef50_Q0IL20 Cluster: ORF99; n=14; Nucleopolyhedrovirus|Rep: ... 64 4e-10
UniRef50_Q8B4M7 Cluster: ORF92-like protein; n=1; Choristoneura ... 35 0.31
UniRef50_Q6QXM2 Cluster: ORF82; n=2; Granulovirus|Rep: ORF82 - A... 34 0.54
UniRef50_O71120 Cluster: ORF503; n=1; Trichoplusia ni granulovir... 33 0.94
UniRef50_A5IZT4 Cluster: Putative uncharacterized protein orf82;... 33 0.94
UniRef50_A0BC37 Cluster: Chromosome undetermined scaffold_1, who... 32 2.2
UniRef50_Q1RJ83 Cluster: Putative uncharacterized protein; n=2; ... 32 2.9
UniRef50_Q91EW3 Cluster: ORF92 similar to AcMNPV ORF93; n=3; Gra... 31 5.0
UniRef50_Q7T9T7 Cluster: ORF_78; n=1; Adoxophyes orana granulovi... 31 6.6
UniRef50_Q4J719 Cluster: Carbon monoxide dehydrogenase large cha... 31 6.6
UniRef50_Q3ZXP7 Cluster: Hydrogenase subunit HymB; n=7; Bacteria... 30 8.8
UniRef50_Q12YG4 Cluster: Putative uncharacterized protein; n=1; ... 30 8.8
>UniRef50_P41481 Cluster: P18 protein; n=12;
Nucleopolyhedrovirus|Rep: P18 protein - Autographa
californica nuclear polyhedrosis virus (AcMNPV)
Length = 161
Score = 124 bits (299), Expect = 4e-28
Identities = 58/59 (98%), Positives = 59/59 (100%)
Frame = -2
Query: 179 KTYVNLVDESAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHN 3
KTYV+LVDESAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHN
Sbjct: 93 KTYVHLVDESAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHN 151
>UniRef50_Q0N420 Cluster: Ac93-like protein; n=3;
Nucleopolyhedrovirus|Rep: Ac93-like protein - Clanis
bilineata nucleopolyhedrosis virus
Length = 171
Score = 67.3 bits (157), Expect = 6e-11
Identities = 31/59 (52%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
Frame = -2
Query: 179 KTYVNLVDESAFGSNVINYCEQFITAIFEIFTLSSKIVVAVP--VNWENDNLSVLLKHL 9
KTYV LVDESAFG++++ C ++T IF +F L S+I+V +P N DNLS +LKHL
Sbjct: 104 KTYVELVDESAFGNDILESCVDYVTNIFRLFRLQSRIIVVLPPHANLAQDNLSEVLKHL 162
>UniRef50_Q0IL20 Cluster: ORF99; n=14; Nucleopolyhedrovirus|Rep:
ORF99 - Leucania separata nuclear polyhedrosis virus
(LsNPV)
Length = 168
Score = 64.5 bits (150), Expect = 4e-10
Identities = 30/59 (50%), Positives = 44/59 (74%), Gaps = 2/59 (3%)
Frame = -2
Query: 179 KTYVNLVDESAFGSNVINYCEQFITAIFEIFTLSSKIVVAVP--VNWENDNLSVLLKHL 9
KT V+L+D+SA+ +NV+ CE +T +F++FT S+IVV +P VN++ DNLS LL HL
Sbjct: 98 KTCVDLIDDSAWAANVLESCETLVTYMFKLFTDRSQIVVIIPPEVNYQEDNLSALLNHL 156
>UniRef50_Q8B4M7 Cluster: ORF92-like protein; n=1; Choristoneura
fumiferana granulovirus|Rep: ORF92-like protein -
Choristoneura fumiferana granulovirus (CfGV)
Length = 140
Score = 35.1 bits (77), Expect = 0.31
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = -2
Query: 155 ESAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKH 12
ESAF ++ C++ + +FE+F + I V + + +DN+ V+L H
Sbjct: 76 ESAFDIDLKVLCQEIVCTLFELFNCVTDITVYLKADLNDDNVIVILLH 123
>UniRef50_Q6QXM2 Cluster: ORF82; n=2; Granulovirus|Rep: ORF82 -
Agrotis segetum granulosis virus (AsGV) (Agrotis
segetumgranulovirus)
Length = 167
Score = 34.3 bits (75), Expect = 0.54
Identities = 14/51 (27%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = -2
Query: 158 DESAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWE-NDNLSVLLKHL 9
+++AFG+ C + + ++E+F+ ++ IVV + + D +++LL HL
Sbjct: 93 EDTAFGNECAQLCLEIVQLMYELFSCTTNIVVLIESEADPEDEINLLLAHL 143
>UniRef50_O71120 Cluster: ORF503; n=1; Trichoplusia ni
granulovirus|Rep: ORF503 - Trichoplusia ni granulosis
virus (TnGV) (Trichoplusia nigranulovirus)
Length = 68
Score = 33.5 bits (73), Expect = 0.94
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = -2
Query: 158 DESAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDN-LSVLLKHLHN 3
D SAFG + + C + +++++F +S IVV V + + +N + VLL+ L +
Sbjct: 4 DRSAFGQDCVAQCIDIVYSVYQVFNRTSDIVVNVKQDIDANNVVYVLLEGLRS 56
>UniRef50_A5IZT4 Cluster: Putative uncharacterized protein orf82;
n=1; Spodoptera litura granulovirus|Rep: Putative
uncharacterized protein orf82 - Spodoptera litura
granulovirus
Length = 155
Score = 33.5 bits (73), Expect = 0.94
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = -2
Query: 179 KTYVN-LVDESAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWE-NDNLSVLLKHLH 6
K YV + SAFG +N C + ++E+F+ + I V V + + +D+L +LL +L
Sbjct: 86 KKYVQEFGNTSAFGKECVNACLDIVCCMYELFSFIADINVYVRADTDPDDDLFILLTYLQ 145
Query: 5 N 3
+
Sbjct: 146 S 146
>UniRef50_A0BC37 Cluster: Chromosome undetermined scaffold_1, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_1,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 273
Score = 32.3 bits (70), Expect = 2.2
Identities = 20/50 (40%), Positives = 25/50 (50%)
Frame = -2
Query: 158 DESAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHL 9
+E+ F SN+ NY Q I I E TLS KI E D LL++L
Sbjct: 191 EETKFTSNIQNYGRQLIETIEEQVTLSDKINSNTANKKEGDKQPELLEYL 240
>UniRef50_Q1RJ83 Cluster: Putative uncharacterized protein; n=2;
Rickettsia bellii|Rep: Putative uncharacterized protein
- Rickettsia bellii (strain RML369-C)
Length = 430
Score = 31.9 bits (69), Expect = 2.9
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = -2
Query: 119 EQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKH 12
+ FIT + +S+K ++++ NW DN+ ++ +H
Sbjct: 104 KSFITLLEHSKKISAKNIISIAENWSKDNIKIIFEH 139
>UniRef50_Q91EW3 Cluster: ORF92 similar to AcMNPV ORF93; n=3;
Granulovirus|Rep: ORF92 similar to AcMNPV ORF93 - Cydia
pomonella granulosis virus (CpGV) (Cydia
pomonellagranulovirus)
Length = 161
Score = 31.1 bits (67), Expect = 5.0
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Frame = -2
Query: 155 ESAFGSNVINYCEQFITAIFEIFTLSSKIVVAV--PVNWENDNLSVLLKHLHN 3
+SAF +++ C + + FE+F+ ++ IVV V N++++ L+ LL L +
Sbjct: 97 QSAFDIDLMQTCREIVYLTFELFSCAANIVVFVHASANYKDNVLAQLLVELQS 149
>UniRef50_Q7T9T7 Cluster: ORF_78; n=1; Adoxophyes orana
granulovirus|Rep: ORF_78 - Adoxophyes orana granulovirus
(AoGV)
Length = 164
Score = 30.7 bits (66), Expect = 6.6
Identities = 13/52 (25%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = -2
Query: 155 ESAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNW-ENDNLSVLLKHLHN 3
+S+F + ++ ++ ++ FE+F+ SK++V V + E+ N+ LL+ + +
Sbjct: 101 DSSFDNKIVEMTQELVSISFELFSCMSKVIVYVRYDADESHNIMGLLRKIES 152
>UniRef50_Q4J719 Cluster: Carbon monoxide dehydrogenase large chain;
n=2; Sulfolobus|Rep: Carbon monoxide dehydrogenase large
chain - Sulfolobus acidocaldarius
Length = 725
Score = 30.7 bits (66), Expect = 6.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 149 AFGSNVINYCEQFITAIFEIFT 84
AFGS +INY E+F+ A + T
Sbjct: 222 AFGSKIINYAEEFVVAYLSVVT 243
>UniRef50_Q3ZXP7 Cluster: Hydrogenase subunit HymB; n=7;
Bacteria|Rep: Hydrogenase subunit HymB - Dehalococcoides
sp. (strain CBDB1)
Length = 640
Score = 30.3 bits (65), Expect = 8.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 145 SAATLLTIANSLSRPFSKFLRSAVKSLWPCPS 50
S+A + I + P K++R+A+K LW PS
Sbjct: 307 SSALMTAIEGRVGEPRPKYIRTAIKGLWDKPS 338
>UniRef50_Q12YG4 Cluster: Putative uncharacterized protein; n=1;
Methanococcoides burtonii DSM 6242|Rep: Putative
uncharacterized protein - Methanococcoides burtonii
(strain DSM 6242)
Length = 128
Score = 30.3 bits (65), Expect = 8.8
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 24 YT*IIVFPIDGHGHNDFTAERKNFENGRDKLFA 122
Y+ +VF I+ HG+++ T E K F + D +FA
Sbjct: 26 YSDSLVFAIENHGNDNHTIEVKIFNDDSDMIFA 58
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,738,487
Number of Sequences: 1657284
Number of extensions: 2370258
Number of successful extensions: 7218
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7216
length of database: 575,637,011
effective HSP length: 39
effective length of database: 511,002,935
effective search space used: 10220058700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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