Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13f09
         (180 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    24   0.16 
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   1.5  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    21   1.5  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    20   2.0  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    19   4.6  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    19   6.1  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    18   8.1  

>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 23.8 bits (49), Expect = 0.16
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 166 IWSTSLRSAATLLTIANSLSRPFSK 92
           I+S  L +  TLL I +S+ RP+ K
Sbjct: 25  IYSFLLLTTLTLLVILSSIDRPYLK 49


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 1.5
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -1

Query: 159 RRVCVRQQRY*LLRTVYHGHFRNFYAQ 79
           ++ CV  Q    +  + +GH++NF +Q
Sbjct: 193 QKFCVVNQYIKQVCKLNNGHYKNFLSQ 219


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 20.6 bits (41), Expect = 1.5
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -1

Query: 159 RRVCVRQQRY*LLRTVYHGHFRNFYAQ 79
           ++ CV  Q    +  + +GH++NF +Q
Sbjct: 18  QKFCVVNQYIKQVCKLNNGHYKNFLSQ 44


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory
          receptor candidate 16 protein.
          Length = 452

 Score = 20.2 bits (40), Expect = 2.0
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -2

Query: 83 LSSKIVVAVPVNWENDNLS 27
          L SKI+   P++++N N++
Sbjct: 15 LLSKILGIAPISYKNSNVN 33


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 19.0 bits (37), Expect = 4.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 147 VRQQRY*LLRTVYHGHFRN 91
           ++Q  Y  LRT Y  HF +
Sbjct: 29  LQQHGYGPLRTSYQHHFNS 47


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 18.6 bits (36), Expect = 6.1
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 3   VVQMFQKYT*IIVFPIDGH 59
           V ++ +K T  + FP D H
Sbjct: 188 VKKILEKETQTVAFPKDNH 206


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 18.2 bits (35), Expect = 8.1
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = +3

Query: 51  DGHGHN 68
           +GHGHN
Sbjct: 289 NGHGHN 294


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,541
Number of Sequences: 336
Number of extensions: 631
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 39
effective length of database: 109,481
effective search space used:  2189620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)