Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13f09
         (180 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412...    29   0.70 
12_01_0538 - 4225321-4225689                                           26   3.7  
04_04_1062 - 30498158-30498271,30498358-30498518,30498606-304989...    26   3.7  
03_02_0248 + 6783643-6783794,6784912-6784947,6785977-6785998,678...    26   4.9  

>09_06_0016 -
           20240358-20240797,20241040-20241131,20241132-20241250,
           20241398-20241561,20241664-20241757,20242048-20242080,
           20242361-20242478,20242712-20242812,20242882-20242962,
           20243138-20243335,20243411-20243545,20243662-20243667,
           20243727-20243805,20243845-20243896,20244328-20244388,
           20244475-20244532,20245137-20245225,20246305-20246799
          Length = 804

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -2

Query: 155 ESAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDNLSVL 21
           E   G+NV+  CE    A+  +  +S  +V    + W  + L+ L
Sbjct: 182 EPEAGANVVKSCESLFAALVGLTAVSLHLVETFLIKWRKEKLTQL 226


>12_01_0538 - 4225321-4225689
          Length = 122

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 57  HGHNDFTAERKNFENGRDKLFAIVNNVAAERRLV 158
           H   D++  R   + GR + FA+VNN+   RR V
Sbjct: 8   HWIQDYSVGRVTDDQGR-RAFALVNNLGGTRRAV 40


>04_04_1062 -
           30498158-30498271,30498358-30498518,30498606-30498924,
           30499412-30499477,30499601-30499726,30499821-30499961,
           30500482-30500535,30501508-30501636,30501733-30501870,
           30501993-30502061,30502135-30502203,30502468-30502623,
           30503795-30503895,30503986-30504136,30504475-30504520,
           30504539-30504637,30504796-30504928,30505018-30505195,
           30505282-30505524,30505612-30505680,30505986-30506085,
           30506898-30507007
          Length = 923

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 164 LVDESAFGSNVINYCEQFITAIFE 93
           L+DE+  GSNVI   E F T +F+
Sbjct: 329 LIDENRKGSNVIKVIEGFETIMFK 352


>03_02_0248 +
           6783643-6783794,6784912-6784947,6785977-6785998,
           6786368-6786440,6786541-6786638
          Length = 126

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 63  HNDFTAERKNFENGRDKLFAIVNNVAAERRLVD 161
           +  FT+   N  N + K  A  NN+ AE RLVD
Sbjct: 93  YEGFTSSTSNHVNLKGKDMATTNNI-AEERLVD 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,529,661
Number of Sequences: 37544
Number of extensions: 62244
Number of successful extensions: 160
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 14,793,348
effective HSP length: 39
effective length of database: 13,329,132
effective search space used: 266582640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)