Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13f05
         (259 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0178 - 1223725-1223736,1223900-1224025,1224404-1224649,122...    28   1.2  
09_04_0163 - 15249816-15249920,15250032-15250163,15250463-152506...    25   8.4  
06_01_0972 - 7509148-7509516,7509748-7509887,7509968-7510035,751...    25   8.4  

>02_01_0178 -
           1223725-1223736,1223900-1224025,1224404-1224649,
           1224731-1224922,1225059-1225138,1225233-1226826
          Length = 749

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = -3

Query: 161 MITDIQLAVFSNILGVSIFLLVILYHYINANSSK*YRSIAAIVKALVS 18
           +ITDI+    +  L V +F   +  H +NA SS+ ++   A VK LVS
Sbjct: 438 LITDIEKIAEAAFLMVVVFSAEVTKHRLNAKSSEGFQPDVA-VKILVS 484


>09_04_0163 -
           15249816-15249920,15250032-15250163,15250463-15250629,
           15251259-15251448,15252530-15252661,15253275-15253382,
           15253513-15253608,15253702-15253809,15253917-15254089,
           15255026-15255401,15255887-15256030,15256125-15256799,
           15256917-15256982,15257082-15257249
          Length = 879

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 174 IQSKNDHRHPARGFLQHFGSLHILISY 94
           ++ KND+      F QHFGS   LIS+
Sbjct: 181 LEIKNDNDAGKHFFHQHFGSTKPLISF 207


>06_01_0972 -
           7509148-7509516,7509748-7509887,7509968-7510035,
           7510504-7510548,7510657-7510676,7510828-7510890,
           7510979-7511190,7511238-7511334
          Length = 337

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 150 HPARGFLQHF-GSLHILISYPVSLHK 76
           +P  GF+Q F  SLH L+ +PV +H+
Sbjct: 246 YPFLGFVQKFSNSLH-LVLFPVQIHQ 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,591,455
Number of Sequences: 37544
Number of extensions: 106718
Number of successful extensions: 166
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 14,793,348
effective HSP length: 64
effective length of database: 12,390,532
effective search space used: 260201172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)