Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13f05
         (259 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            23   1.4  
AY500851-1|AAS77205.1|  605|Anopheles gambiae G-protein coupled ...    23   2.4  
AF043433-1|AAC05656.1|  231|Anopheles gambiae putative pupal-spe...    23   2.4  
AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.         21   5.6  
AF043440-1|AAC05665.1|  234|Anopheles gambiae putative pupal-spe...    21   7.4  
AY330181-1|AAQ16287.1|  156|Anopheles gambiae odorant-binding pr...    21   9.8  

>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 7    FFIRDTNAFTMAAIDLYHL 63
            ++IRD N F +  ID+ +L
Sbjct: 2575 YYIRDANGFVLMDIDMAYL 2593


>AY500851-1|AAS77205.1|  605|Anopheles gambiae G-protein coupled
           receptor 3 protein.
          Length = 605

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +2

Query: 107 IWRLPKCWRKPRAGCR 154
           IWR+   WR   A C+
Sbjct: 285 IWRITVVWRAGNAACK 300


>AF043433-1|AAC05656.1|  231|Anopheles gambiae putative
           pupal-specific cuticular proteinprotein.
          Length = 231

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 153 RHPARGFLQHFGSLH 109
           +H AR  +QH GS+H
Sbjct: 36  QHHARPAIQHVGSIH 50


>AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 168 SKNDHRHP 145
           SK DHRHP
Sbjct: 316 SKTDHRHP 323


>AF043440-1|AAC05665.1|  234|Anopheles gambiae putative
           pupal-specific cuticular proteinCP2d protein.
          Length = 234

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 153 RHPARGFLQHFGSLHIL 103
           +H A   +QH GS+H L
Sbjct: 36  QHHAAPAIQHVGSVHAL 52


>AY330181-1|AAQ16287.1|  156|Anopheles gambiae odorant-binding
           protein AgamOBP55 protein.
          Length = 156

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 118 PKMLEKTASWMSVII 162
           P  LE+T  W++VI+
Sbjct: 3   PTGLERTVLWVTVIV 17


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 259,710
Number of Sequences: 2352
Number of extensions: 3815
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 563,979
effective HSP length: 53
effective length of database: 439,323
effective search space used: 14058336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)