Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13f05
         (259 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48055-3|CAH04721.1|   35|Caenorhabditis elegans Hypothetical pr...    48   1e-06
U41540-10|AAK39228.1|  372|Caenorhabditis elegans Hypothetical p...    27   2.4  
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass...    26   4.2  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    26   4.2  
Z81588-1|CAB04716.1|  281|Caenorhabditis elegans Hypothetical pr...    25   7.4  
AL110479-6|CAB54354.2|  447|Caenorhabditis elegans Hypothetical ...    25   7.4  
Z82073-5|CAB63322.1|  333|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z74472-6|CAA98947.1| 1025|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>Z48055-3|CAH04721.1|   35|Caenorhabditis elegans Hypothetical
           protein T07A5.5 protein.
          Length = 35

 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 17/31 (54%), Positives = 28/31 (90%)
 Frame = -3

Query: 161 MITDIQLAVFSNILGVSIFLLVILYHYINAN 69
           MI+D+QL + +NILG+++ +LV+L+HY+NAN
Sbjct: 1   MISDVQLGIAANILGIAMLMLVVLFHYLNAN 31


>U41540-10|AAK39228.1|  372|Caenorhabditis elegans Hypothetical
           protein F35H12.1 protein.
          Length = 372

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -3

Query: 239 PVSTRIQKNLNTK*FNLIQFKTSNLKMITDIQLAVFSNILGVSIF 105
           PVST I+ N N   F LI     ++K +  +Q  + SN LG   F
Sbjct: 330 PVSTNIRVNFNRINFQLILL---DMKRLLQLQKGLESNSLGTKKF 371


>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform b protein.
          Length = 4034

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = -3

Query: 173  SNLKMITDIQLAVFSNILGV 114
            ++L MI++ + A+FSNI+GV
Sbjct: 2372 ASLDMISESEQAIFSNIIGV 2391


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = -3

Query: 173  SNLKMITDIQLAVFSNILGV 114
            ++L MI++ + A+FSNI+GV
Sbjct: 2372 ASLDMISESEQAIFSNIIGV 2391


>Z81588-1|CAB04716.1|  281|Caenorhabditis elegans Hypothetical
           protein T07D10.1 protein.
          Length = 281

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 161 MITDIQLAVFSNILGVSIFLLVILYHYI 78
           ++  +++  F  ILG  +FLL +L H I
Sbjct: 2   IVASVEVTCFHVILGFLMFLLYLLLHQI 29


>AL110479-6|CAB54354.2|  447|Caenorhabditis elegans Hypothetical
           protein Y105C5B.8 protein.
          Length = 447

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 135 FLQHFGSLHILISYPVSLHKCE*FQ 61
           FL+ FG L  + S P++ + CE F+
Sbjct: 25  FLEIFGVLMCVFSVPLTYYSCECFE 49


>Z82073-5|CAB63322.1|  333|Caenorhabditis elegans Hypothetical
           protein W06D12.7 protein.
          Length = 333

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 31  FTMAAIDLYHLELFAFM**YRITNKNMETPKMLEK 135
           FTMA   +   +L + +   R+TN++ +T KM +K
Sbjct: 205 FTMATASILSAQLISHLLSKRMTNQSDKTKKMHQK 239


>Z74472-6|CAA98947.1| 1025|Caenorhabditis elegans Hypothetical
           protein F23H12.6 protein.
          Length = 1025

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +3

Query: 18  RHQCFYNGRD*PISFGTIRIYVVI 89
           R +C Y+G+  P++F    +Y+V+
Sbjct: 417 RPECGYSGKSCPVNFFVDYLYIVV 440


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,861,633
Number of Sequences: 27780
Number of extensions: 99917
Number of successful extensions: 200
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 12,740,198
effective HSP length: 64
effective length of database: 10,962,278
effective search space used: 230207838
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)