Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13f01
(375 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62244 Cluster: 40S ribosomal protein S15a; n=205; Euka... 124 4e-28
UniRef50_UPI0000608089 Cluster: PREDICTED: similar to Rps15a pro... 112 2e-24
UniRef50_UPI0000D9C93A Cluster: PREDICTED: similar to ribosomal ... 109 2e-23
UniRef50_Q9LX88 Cluster: 40S ribosomal protein S15a-4; n=14; Mag... 108 4e-23
UniRef50_UPI0001552BC3 Cluster: PREDICTED: similar to Rps15a pro... 107 7e-23
UniRef50_A6NIS3 Cluster: Uncharacterized protein ENSP00000348155... 105 3e-22
UniRef50_O05636 Cluster: 30S ribosomal protein S8P; n=12; Archae... 77 8e-14
UniRef50_Q01GJ6 Cluster: Ribosomal protein S15; n=1; Ostreococcu... 50 9e-14
UniRef50_Q8U014 Cluster: 30S ribosomal protein S8P; n=24; Archae... 77 1e-13
UniRef50_Q8PV35 Cluster: 30S ribosomal protein S8P; n=14; Euryar... 60 2e-08
UniRef50_Q9M0E0 Cluster: 40S ribosomal protein S15a-5; n=5; Magn... 57 9e-08
UniRef50_Q8SQL9 Cluster: 40S RIBOSOMAL PROTEIN S15A; n=1; Enceph... 56 3e-07
UniRef50_Q6L1B2 Cluster: 30S ribosomal protein S8P; n=4; Euryarc... 55 5e-07
UniRef50_A0RVY8 Cluster: 30S ribosomal protein S8P; n=3; Thermop... 52 5e-06
UniRef50_A7D102 Cluster: Ribosomal protein S8; n=1; Halorubrum l... 50 1e-05
UniRef50_UPI0000DA3D5D Cluster: PREDICTED: similar to ribosomal ... 47 1e-04
UniRef50_Q74NG1 Cluster: 30S ribosomal protein S8P; n=1; Nanoarc... 42 0.003
UniRef50_Q0JQL2 Cluster: Os01g0153200 protein; n=4; Oryza sativa... 42 0.004
UniRef50_UPI0000E1E986 Cluster: PREDICTED: hypothetical protein;... 35 0.56
UniRef50_Q02A72 Cluster: TonB-dependent receptor precursor; n=1;... 31 5.2
UniRef50_Q3VKB0 Cluster: Putative uncharacterized protein; n=1; ... 31 9.1
>UniRef50_P62244 Cluster: 40S ribosomal protein S15a; n=205;
Eukaryota|Rep: 40S ribosomal protein S15a - Homo sapiens
(Human)
Length = 130
Score = 124 bits (300), Expect = 4e-28
Identities = 60/80 (75%), Positives = 65/80 (81%)
Frame = -3
Query: 262 EKRGKRQVLIXPCSKVIVKFLTVMMKHGXIGEFEIVDDHRAGKIVVXXTGRLNKXGVISP 83
EKRGKRQVLI PCSKVIV+FLTVMMKHG IGEFEI+DDHRAGKIVV TGRLNK GVISP
Sbjct: 18 EKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISP 77
Query: 82 RXDVPINDXEQMELICSPHR 23
R DV + D E+ + P R
Sbjct: 78 RFDVQLKDLEKWQNNLLPSR 97
Score = 30.7 bits (66), Expect = 9.1
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = -2
Query: 314 MVRMXVLSDALKSIHNA*K 258
MVRM VL+DALKSI+NA K
Sbjct: 1 MVRMNVLADALKSINNAEK 19
>UniRef50_UPI0000608089 Cluster: PREDICTED: similar to Rps15a
protein; n=5; Amniota|Rep: PREDICTED: similar to Rps15a
protein - Mus musculus
Length = 253
Score = 112 bits (269), Expect = 2e-24
Identities = 54/73 (73%), Positives = 59/73 (80%)
Frame = -3
Query: 262 EKRGKRQVLIXPCSKVIVKFLTVMMKHGXIGEFEIVDDHRAGKIVVXXTGRLNKXGVISP 83
EKRGKRQVLI PCSKVIV FLTVMMKHG GEFEI+DDHR GKIVV TGRLNK GVIS
Sbjct: 141 EKRGKRQVLIRPCSKVIVWFLTVMMKHGYTGEFEIIDDHRDGKIVVNLTGRLNKCGVISL 200
Query: 82 RXDVPINDXEQME 44
R DV + D ++ +
Sbjct: 201 RFDVQLKDLDKWQ 213
Score = 30.7 bits (66), Expect = 9.1
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = -2
Query: 314 MVRMXVLSDALKSIHNA*K 258
MVRM VL+DALKSI+NA K
Sbjct: 124 MVRMNVLADALKSINNAEK 142
>UniRef50_UPI0000D9C93A Cluster: PREDICTED: similar to ribosomal
protein S15a; n=1; Macaca mulatta|Rep: PREDICTED:
similar to ribosomal protein S15a - Macaca mulatta
Length = 345
Score = 109 bits (261), Expect = 2e-23
Identities = 53/71 (74%), Positives = 58/71 (81%)
Frame = -3
Query: 262 EKRGKRQVLIXPCSKVIVKFLTVMMKHGXIGEFEIVDDHRAGKIVVXXTGRLNKXGVISP 83
EKRGKRQVLI CSKVIV+FL+VMMKHG IGEFEI+DDH AGKIVV TGRLNK GVI+
Sbjct: 184 EKRGKRQVLIRLCSKVIVRFLSVMMKHGYIGEFEIIDDHTAGKIVVNLTGRLNKCGVINT 243
Query: 82 RXDVPINDXEQ 50
R DV D E+
Sbjct: 244 RFDVQPKDLEK 254
>UniRef50_Q9LX88 Cluster: 40S ribosomal protein S15a-4; n=14;
Magnoliophyta|Rep: 40S ribosomal protein S15a-4 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 130
Score = 108 bits (259), Expect = 4e-23
Identities = 51/70 (72%), Positives = 56/70 (80%)
Frame = -3
Query: 262 EKRGKRQVLIXPCSKVIVKFLTVMMKHGXIGEFEIVDDHRAGKIVVXXTGRLNKXGVISP 83
EKRGKRQV+I P SKVI+KFL VM KHG IGEFE VDDHR+GKIVV GRLNK GVISP
Sbjct: 18 EKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISP 77
Query: 82 RXDVPINDXE 53
R DV + + E
Sbjct: 78 RFDVGVKEIE 87
>UniRef50_UPI0001552BC3 Cluster: PREDICTED: similar to Rps15a
protein; n=3; Mus musculus|Rep: PREDICTED: similar to
Rps15a protein - Mus musculus
Length = 239
Score = 107 bits (257), Expect = 7e-23
Identities = 53/80 (66%), Positives = 59/80 (73%)
Frame = -3
Query: 262 EKRGKRQVLIXPCSKVIVKFLTVMMKHGXIGEFEIVDDHRAGKIVVXXTGRLNKXGVISP 83
EK GKRQ I CSK IV+FLTVMMKHG I EFEI+DDHRAGK+VV TGRLNK GVISP
Sbjct: 116 EKGGKRQFPIRLCSKAIVRFLTVMMKHGYISEFEIIDDHRAGKMVVNLTGRLNKCGVISP 175
Query: 82 RXDVPINDXEQMELICSPHR 23
R DV + D E+ + P R
Sbjct: 176 RFDVQLKDLEKWQNNLLPAR 195
>UniRef50_A6NIS3 Cluster: Uncharacterized protein ENSP00000348155;
n=33; Eukaryota|Rep: Uncharacterized protein
ENSP00000348155 - Homo sapiens (Human)
Length = 129
Score = 105 bits (251), Expect = 3e-22
Identities = 50/73 (68%), Positives = 59/73 (80%)
Frame = -3
Query: 262 EKRGKRQVLIXPCSKVIVKFLTVMMKHGXIGEFEIVDDHRAGKIVVXXTGRLNKXGVISP 83
+KRGKRQVL+ PCS+VI++FLTVM KHG IGEFEI DDHRAGK+VV T RLNK GVISP
Sbjct: 18 KKRGKRQVLLRPCSEVIIRFLTVM-KHGYIGEFEITDDHRAGKMVVYLTDRLNKCGVISP 76
Query: 82 RXDVPINDXEQME 44
R V + D E+ +
Sbjct: 77 RFHVQLKDLEKWQ 89
>UniRef50_O05636 Cluster: 30S ribosomal protein S8P; n=12;
Archaea|Rep: 30S ribosomal protein S8P - Sulfolobus
acidocaldarius
Length = 133
Score = 77.4 bits (182), Expect = 8e-14
Identities = 37/67 (55%), Positives = 44/67 (65%)
Frame = -3
Query: 262 EKRGKRQVLIXPCSKVIVKFLTVMMKHGXIGEFEIVDDHRAGKIVVXXTGRLNKXGVISP 83
E R +Q LI P SK+I+ L VM K G IGEFE +DD RAGKI+V GR+NK G ISP
Sbjct: 18 EMRRNKQALITPASKLIISVLRVMQKEGYIGEFEYIDDGRAGKIIVQLLGRINKCGPISP 77
Query: 82 RXDVPIN 62
R + N
Sbjct: 78 RYPLDYN 84
>UniRef50_Q01GJ6 Cluster: Ribosomal protein S15; n=1; Ostreococcus
tauri|Rep: Ribosomal protein S15 - Ostreococcus tauri
Length = 144
Score = 50.4 bits (115), Expect(2) = 9e-14
Identities = 22/31 (70%), Positives = 24/31 (77%)
Frame = -3
Query: 181 GXIGEFEIVDDHRAGKIVVXXTGRLNKXGVI 89
G I EFE +DDHRAGKIVV GR+NK GVI
Sbjct: 107 GYINEFEFIDDHRAGKIVVELNGRINKCGVI 137
Score = 47.2 bits (107), Expect(2) = 9e-14
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = -3
Query: 262 EKRGKRQVLIXPCSKVIVKFLTVMMKH 182
EKRGKRQVL+ P SKV++KFL VM KH
Sbjct: 50 EKRGKRQVLVRPVSKVVIKFLQVMQKH 76
>UniRef50_Q8U014 Cluster: 30S ribosomal protein S8P; n=24;
Archaea|Rep: 30S ribosomal protein S8P - Pyrococcus
furiosus
Length = 130
Score = 76.6 bits (180), Expect = 1e-13
Identities = 37/73 (50%), Positives = 48/73 (65%)
Frame = -3
Query: 262 EKRGKRQVLIXPCSKVIVKFLTVMMKHGXIGEFEIVDDHRAGKIVVXXTGRLNKXGVISP 83
E+ GKR+V I P SK+I + L VM K+G IGEFE +DD RAG V GR+NK G I P
Sbjct: 18 ERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLLGRINKAGAIKP 77
Query: 82 RXDVPINDXEQME 44
R V +++ E+ E
Sbjct: 78 RFPVKVSEFEKWE 90
>UniRef50_Q8PV35 Cluster: 30S ribosomal protein S8P; n=14;
Euryarchaeota|Rep: 30S ribosomal protein S8P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 130
Score = 59.7 bits (138), Expect = 2e-08
Identities = 31/73 (42%), Positives = 38/73 (52%)
Frame = -3
Query: 262 EKRGKRQVLIXPCSKVIVKFLTVMMKHGXIGEFEIVDDHRAGKIVVXXTGRLNKXGVISP 83
E GK ++ P SK I L VM G IG+FE +DD +AG V GR+NK G I P
Sbjct: 18 EAIGKSSCIVRPASKNIGNVLKVMQDLGYIGDFEFIDDGKAGIYSVTLVGRINKCGAIKP 77
Query: 82 RXDVPINDXEQME 44
R V E+ E
Sbjct: 78 RYSVGTGSFERWE 90
>UniRef50_Q9M0E0 Cluster: 40S ribosomal protein S15a-5; n=5;
Magnoliophyta|Rep: 40S ribosomal protein S15a-5 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 129
Score = 57.2 bits (132), Expect = 9e-08
Identities = 27/71 (38%), Positives = 40/71 (56%)
Frame = -3
Query: 262 EKRGKRQVLIXPCSKVIVKFLTVMMKHGXIGEFEIVDDHRAGKIVVXXTGRLNKXGVISP 83
E+RGK V + P S V+ FL +M + G I F++ D HR G+I V GR+N ++
Sbjct: 17 ERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDLQGRVNDCKALTY 76
Query: 82 RXDVPINDXEQ 50
R DV + E+
Sbjct: 77 RQDVRAKEIEK 87
>UniRef50_Q8SQL9 Cluster: 40S RIBOSOMAL PROTEIN S15A; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S15A
- Encephalitozoon cuniculi
Length = 128
Score = 55.6 bits (128), Expect = 3e-07
Identities = 28/79 (35%), Positives = 42/79 (53%)
Frame = -3
Query: 259 KRGKRQVLIXPCSKVIVKFLTVMMKHGXIGEFEIVDDHRAGKIVVXXTGRLNKXGVISPR 80
+ GKRQ+L+ ++ + FL M++HG I F + D R+GK ++ GRLN+ G ISP
Sbjct: 17 RAGKRQLLLRFSTEEMRMFLLQMLRHGYISGFSYIHDKRSGKSIIDLNGRLNRCGAISPN 76
Query: 79 XDVPINDXEQMELICSPHR 23
V + E P R
Sbjct: 77 YIVKRDGIEDFRTRLLPAR 95
>UniRef50_Q6L1B2 Cluster: 30S ribosomal protein S8P; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S8P -
Picrophilus torridus
Length = 129
Score = 54.8 bits (126), Expect = 5e-07
Identities = 26/70 (37%), Positives = 40/70 (57%)
Frame = -3
Query: 253 GKRQVLIXPCSKVIVKFLTVMMKHGXIGEFEIVDDHRAGKIVVXXTGRLNKXGVISPRXD 74
GK +V+I P S +I + L VM + I FE++++ R GK V + +N GVI PR
Sbjct: 20 GKSEVIIGPASVMIGRILKVMQDYNYIKSFEVIEEERGGKFRVELSDTINNCGVIKPRLS 79
Query: 73 VPINDXEQME 44
V ++ E+ E
Sbjct: 80 VKNSNIERYE 89
>UniRef50_A0RVY8 Cluster: 30S ribosomal protein S8P; n=3;
Thermoprotei|Rep: 30S ribosomal protein S8P -
Cenarchaeum symbiosum
Length = 130
Score = 51.6 bits (118), Expect = 5e-06
Identities = 27/64 (42%), Positives = 35/64 (54%)
Frame = -3
Query: 262 EKRGKRQVLIXPCSKVIVKFLTVMMKHGXIGEFEIVDDHRAGKIVVXXTGRLNKXGVISP 83
E R + + P SK+ V+ L + K G IGEFE V+D R GK V ++ K G ISP
Sbjct: 18 EARRRGDCQVYPTSKLGVEVLGTLKKAGYIGEFEHVEDSRGGKFSVHLLAKITKCGAISP 77
Query: 82 RXDV 71
R V
Sbjct: 78 RFKV 81
>UniRef50_A7D102 Cluster: Ribosomal protein S8; n=1; Halorubrum
lacusprofundi ATCC 49239|Rep: Ribosomal protein S8 -
Halorubrum lacusprofundi ATCC 49239
Length = 147
Score = 50.0 bits (114), Expect = 1e-05
Identities = 26/80 (32%), Positives = 37/80 (46%)
Frame = -3
Query: 262 EKRGKRQVLIXPCSKVIVKFLTVMMKHGXIGEFEIVDDHRAGKIVVXXTGRLNKXGVISP 83
E G + P S +I L V+ G + FE VDD +AGK V G +N+ G + P
Sbjct: 35 ESVGHLSYTVEPASNIIGSVLEVLYDRGYVDGFEYVDDGKAGKFEVELKGAINECGAVKP 94
Query: 82 RXDVPINDXEQMELICSPHR 23
R ++ E+ E P R
Sbjct: 95 RYSAGADEFEKWEKRYLPAR 114
>UniRef50_UPI0000DA3D5D Cluster: PREDICTED: similar to ribosomal
protein S15a; n=1; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein S15a - Rattus norvegicus
Length = 60
Score = 47.2 bits (107), Expect = 1e-04
Identities = 26/53 (49%), Positives = 32/53 (60%)
Frame = -3
Query: 205 FLTVMMKHGXIGEFEIVDDHRAGKIVVXXTGRLNKXGVISPRXDVPINDXEQM 47
F+TV MK G+FEIVD+ G+I V G LNK GVI DV + D E+M
Sbjct: 3 FVTVKMK---TGKFEIVDNEGVGRITVSLMGSLNKYGVIGLGFDVQLGDLEKM 52
>UniRef50_Q74NG1 Cluster: 30S ribosomal protein S8P; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S8P -
Nanoarchaeum equitans
Length = 129
Score = 42.3 bits (95), Expect = 0.003
Identities = 19/72 (26%), Positives = 36/72 (50%)
Frame = -3
Query: 259 KRGKRQVLIXPCSKVIVKFLTVMMKHGXIGEFEIVDDHRAGKIVVXXTGRLNKXGVISPR 80
++G+ + P S +I+K + +M + G I + +VD R I + + N+ I PR
Sbjct: 18 RKGEDKTAFFPVSNLIIKLVEIMKREGYIKNYRLVDSSRGKIIEIELSEYFNEANAIKPR 77
Query: 79 XDVPINDXEQME 44
V ++ E+ E
Sbjct: 78 FPVEYSELEKYE 89
>UniRef50_Q0JQL2 Cluster: Os01g0153200 protein; n=4; Oryza sativa|Rep:
Os01g0153200 protein - Oryza sativa subsp. japonica
(Rice)
Length = 1139
Score = 41.9 bits (94), Expect = 0.004
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = -3
Query: 157 VDDHRAGKIVVXXTGRLNKXGVISPRXDVPI 65
VDDH++G+I++ GRLNK GVIS R DV +
Sbjct: 912 VDDHKSGEIILEFDGRLNKWGVISFRSDVKV 942
>UniRef50_UPI0000E1E986 Cluster: PREDICTED: hypothetical protein;
n=1; Pan troglodytes|Rep: PREDICTED: hypothetical
protein - Pan troglodytes
Length = 116
Score = 34.7 bits (76), Expect = 0.56
Identities = 13/16 (81%), Positives = 16/16 (100%)
Frame = -3
Query: 175 IGEFEIVDDHRAGKIV 128
IG+FE++DDHRAGKIV
Sbjct: 9 IGKFEVIDDHRAGKIV 24
>UniRef50_Q02A72 Cluster: TonB-dependent receptor precursor; n=1;
Solibacter usitatus Ellin6076|Rep: TonB-dependent
receptor precursor - Solibacter usitatus (strain
Ellin6076)
Length = 677
Score = 31.5 bits (68), Expect = 5.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 97 GVISPRXDVPINDXEQMELICSPHRSVWLPS 5
GVI DVP+ D EQ+E++ P +W P+
Sbjct: 126 GVIWDAVDVPLGDVEQIEIVRGPGAVMWGPN 156
>UniRef50_Q3VKB0 Cluster: Putative uncharacterized protein; n=1;
Pelodictyon phaeoclathratiforme BU-1|Rep: Putative
uncharacterized protein - Pelodictyon
phaeoclathratiforme BU-1
Length = 740
Score = 30.7 bits (66), Expect = 9.1
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = -3
Query: 253 GKRQVLIXPCSKVIVKFLTVMMKHGXIGEFE----IVDDHRAGKIVVXXTGRLNK 101
G L+ KV+ K LT+ + HG + E E + H+ K+V+ T + NK
Sbjct: 23 GAEASLLDLLRKVLTKELTIFVVHGSLEELECKYTVEKFHKGDKVVIIATSQKNK 77
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 286,128,175
Number of Sequences: 1657284
Number of extensions: 4152170
Number of successful extensions: 6023
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 5942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6022
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 14019197511
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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