Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13f01
         (375 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...   103   7e-24
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...   103   7e-24
SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae Q0...    27   1.3  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   5.1  

>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  103 bits (248), Expect = 7e-24
 Identities = 51/88 (57%), Positives = 61/88 (69%)
 Frame = -3

Query: 280 NLYIMPEKRGKRQVLIXPCSKVIVKFLTVMMKHGXIGEFEIVDDHRAGKIVVXXTGRLNK 101
           N  +  E+RG+RQVLI P SKVIVKFLTVM KHG I EF  +DDHR+GKIV+   GR+NK
Sbjct: 12  NNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGKIVIQLNGRINK 71

Query: 100 XGVISPRXDVPINDXEQMELICSPHRSV 17
            GVISPR +V + D E+      P R V
Sbjct: 72  CGVISPRFNVKLKDIEKWVNQLLPSRQV 99


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  103 bits (248), Expect = 7e-24
 Identities = 51/88 (57%), Positives = 61/88 (69%)
 Frame = -3

Query: 280 NLYIMPEKRGKRQVLIXPCSKVIVKFLTVMMKHGXIGEFEIVDDHRAGKIVVXXTGRLNK 101
           N  +  E+RG+RQVLI P SKVIVKFLTVM KHG I EF  +DDHR+GKIV+   GR+NK
Sbjct: 12  NNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGKIVIQLNGRINK 71

Query: 100 XGVISPRXDVPINDXEQMELICSPHRSV 17
            GVISPR +V + D E+      P R V
Sbjct: 72  CGVISPRFNVKLKDIEKWVNQLLPSRQV 99


>SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae
           Q0130|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 74

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 30  GEQISSICSXSLMGTSKRGEMTPHLFSLPV 119
           G  I  I S  + GTS+   + PHLFS+ +
Sbjct: 21  GVGIGLIFSNLISGTSRNPSVRPHLFSMAI 50


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 45  SICSXSLMGTSKRGEMTPHLFSLPVXXTTILPAL 146
           S+ S S   +      TPH F  PV   + LPAL
Sbjct: 169 SVASVSSPNSHNAVPFTPHAFVPPVNNASPLPAL 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,195,578
Number of Sequences: 5004
Number of extensions: 18084
Number of successful extensions: 31
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)