Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13f01
         (375 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823          110   4e-25
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419...   109   7e-25
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289           64   5e-11
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286...    42   2e-04
11_04_0367 - 16840732-16843428,16844425-16844760                       26   8.4  

>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
          Length = 130

 Score =  110 bits (264), Expect = 4e-25
 Identities = 54/80 (67%), Positives = 58/80 (72%)
 Frame = -3

Query: 262 EKRGKRQVLIXPCSKVIVKFLTVMMKHGXIGEFEIVDDHRAGKIVVXXTGRLNKXGVISP 83
           EKRGKRQVLI P SKVI+KFL VM KHG IGEFE VDDHR+GKIVV   GRLNK GVISP
Sbjct: 18  EKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGKIVVELNGRLNKCGVISP 77

Query: 82  RXDVPINDXEQMELICSPHR 23
           R DV + + E       P R
Sbjct: 78  RFDVGVKEIESWTARLLPSR 97



 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/19 (63%), Positives = 17/19 (89%)
 Frame = -2

Query: 314 MVRMXVLSDALKSIHNA*K 258
           MVR+ VL+DALK+++NA K
Sbjct: 1   MVRVSVLNDALKTMYNAEK 19


>02_03_0219 +
           16541350-16541482,16541605-16541765,16541863-16541940,
           16543176-16543445
          Length = 213

 Score =  109 bits (262), Expect = 7e-25
 Identities = 53/80 (66%), Positives = 58/80 (72%)
 Frame = -3

Query: 262 EKRGKRQVLIXPCSKVIVKFLTVMMKHGXIGEFEIVDDHRAGKIVVXXTGRLNKXGVISP 83
           EKRGKRQV+I P SKVI+KFL VM KHG IGEFE VDDHR+GKIVV   GRLNK GVISP
Sbjct: 18  EKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGKIVVELNGRLNKCGVISP 77

Query: 82  RXDVPINDXEQMELICSPHR 23
           R DV + + E       P R
Sbjct: 78  RFDVGVKEIESWTARLLPSR 97



 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/19 (63%), Positives = 17/19 (89%)
 Frame = -2

Query: 314 MVRMXVLSDALKSIHNA*K 258
           MVR+ VL+DALK+++NA K
Sbjct: 1   MVRVSVLNDALKTMYNAEK 19


>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
          Length = 129

 Score = 63.7 bits (148), Expect = 5e-11
 Identities = 31/80 (38%), Positives = 44/80 (55%)
 Frame = -3

Query: 262 EKRGKRQVLIXPCSKVIVKFLTVMMKHGXIGEFEIVDDHRAGKIVVXXTGRLNKXGVISP 83
           E+RGK   L+ P S V+V FL +M   G I +FE++D HR GKI V   GR+     ++ 
Sbjct: 17  ERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKINVELHGRIKDCKALTY 76

Query: 82  RXDVPINDXEQMELICSPHR 23
           R D+   + EQ  +   P R
Sbjct: 77  RQDIRAKEIEQYRVRMLPTR 96


>01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,
            2863431-2863516,2863648-2866272
          Length = 1139

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 18/31 (58%), Positives = 24/31 (77%)
 Frame = -3

Query: 157  VDDHRAGKIVVXXTGRLNKXGVISPRXDVPI 65
            VDDH++G+I++   GRLNK GVIS R DV +
Sbjct: 912  VDDHKSGEIILEFDGRLNKWGVISFRSDVKV 942


>11_04_0367 - 16840732-16843428,16844425-16844760
          Length = 1010

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 162 SNSPMXPCFIITVKNLTMTLEQGXMRTCLFPR 257
           + S + P   ++ KN+ + L+Q  +  CLFP+
Sbjct: 424 AQSEVLPALKLSYKNMPVHLKQCFLALCLFPK 455


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,792,476
Number of Sequences: 37544
Number of extensions: 117423
Number of successful extensions: 235
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)