Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13f01
(375 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC105292-1|AAI05293.1| 130|Homo sapiens ribosomal protein S15a ... 124 7e-29
BC105273-1|AAI05274.1| 130|Homo sapiens ribosomal protein S15a ... 124 7e-29
BC046113-1|AAH46113.1| 130|Homo sapiens ribosomal protein S15a ... 124 7e-29
BC030569-1|AAH30569.1| 130|Homo sapiens ribosomal protein S15a ... 124 7e-29
BC001697-1|AAH01697.1| 130|Homo sapiens ribosomal protein S15a ... 124 7e-29
AY208299-1|AAO48936.1| 130|Homo sapiens S15a protein. 124 7e-29
AB062400-1|BAB93487.1| 130|Homo sapiens OK/SW-cl.82 protein. 124 7e-29
X84407-1|CAA59127.1| 130|Homo sapiens ribosomal protein S15a pr... 123 2e-28
X62691-1|CAA44568.1| 129|Homo sapiens ribosomal protein homolog... 93 2e-19
>BC105292-1|AAI05293.1| 130|Homo sapiens ribosomal protein S15a
protein.
Length = 130
Score = 124 bits (300), Expect = 7e-29
Identities = 60/80 (75%), Positives = 65/80 (81%)
Frame = -3
Query: 262 EKRGKRQVLIXPCSKVIVKFLTVMMKHGXIGEFEIVDDHRAGKIVVXXTGRLNKXGVISP 83
EKRGKRQVLI PCSKVIV+FLTVMMKHG IGEFEI+DDHRAGKIVV TGRLNK GVISP
Sbjct: 18 EKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISP 77
Query: 82 RXDVPINDXEQMELICSPHR 23
R DV + D E+ + P R
Sbjct: 78 RFDVQLKDLEKWQNNLLPSR 97
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = -2
Query: 314 MVRMXVLSDALKSIHNA*K 258
MVRM VL+DALKSI+NA K
Sbjct: 1 MVRMNVLADALKSINNAEK 19
>BC105273-1|AAI05274.1| 130|Homo sapiens ribosomal protein S15a
protein.
Length = 130
Score = 124 bits (300), Expect = 7e-29
Identities = 60/80 (75%), Positives = 65/80 (81%)
Frame = -3
Query: 262 EKRGKRQVLIXPCSKVIVKFLTVMMKHGXIGEFEIVDDHRAGKIVVXXTGRLNKXGVISP 83
EKRGKRQVLI PCSKVIV+FLTVMMKHG IGEFEI+DDHRAGKIVV TGRLNK GVISP
Sbjct: 18 EKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISP 77
Query: 82 RXDVPINDXEQMELICSPHR 23
R DV + D E+ + P R
Sbjct: 78 RFDVQLKDLEKWQNNLLPSR 97
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = -2
Query: 314 MVRMXVLSDALKSIHNA*K 258
MVRM VL+DALKSI+NA K
Sbjct: 1 MVRMNVLADALKSINNAEK 19
>BC046113-1|AAH46113.1| 130|Homo sapiens ribosomal protein S15a
protein.
Length = 130
Score = 124 bits (300), Expect = 7e-29
Identities = 60/80 (75%), Positives = 65/80 (81%)
Frame = -3
Query: 262 EKRGKRQVLIXPCSKVIVKFLTVMMKHGXIGEFEIVDDHRAGKIVVXXTGRLNKXGVISP 83
EKRGKRQVLI PCSKVIV+FLTVMMKHG IGEFEI+DDHRAGKIVV TGRLNK GVISP
Sbjct: 18 EKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISP 77
Query: 82 RXDVPINDXEQMELICSPHR 23
R DV + D E+ + P R
Sbjct: 78 RFDVQLKDLEKWQNNLLPSR 97
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = -2
Query: 314 MVRMXVLSDALKSIHNA*K 258
MVRM VL+DALKSI+NA K
Sbjct: 1 MVRMNVLADALKSINNAEK 19
>BC030569-1|AAH30569.1| 130|Homo sapiens ribosomal protein S15a
protein.
Length = 130
Score = 124 bits (300), Expect = 7e-29
Identities = 60/80 (75%), Positives = 65/80 (81%)
Frame = -3
Query: 262 EKRGKRQVLIXPCSKVIVKFLTVMMKHGXIGEFEIVDDHRAGKIVVXXTGRLNKXGVISP 83
EKRGKRQVLI PCSKVIV+FLTVMMKHG IGEFEI+DDHRAGKIVV TGRLNK GVISP
Sbjct: 18 EKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISP 77
Query: 82 RXDVPINDXEQMELICSPHR 23
R DV + D E+ + P R
Sbjct: 78 RFDVQLKDLEKWQNNLLPSR 97
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = -2
Query: 314 MVRMXVLSDALKSIHNA*K 258
MVRM VL+DALKSI+NA K
Sbjct: 1 MVRMNVLADALKSINNAEK 19
>BC001697-1|AAH01697.1| 130|Homo sapiens ribosomal protein S15a
protein.
Length = 130
Score = 124 bits (300), Expect = 7e-29
Identities = 60/80 (75%), Positives = 65/80 (81%)
Frame = -3
Query: 262 EKRGKRQVLIXPCSKVIVKFLTVMMKHGXIGEFEIVDDHRAGKIVVXXTGRLNKXGVISP 83
EKRGKRQVLI PCSKVIV+FLTVMMKHG IGEFEI+DDHRAGKIVV TGRLNK GVISP
Sbjct: 18 EKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISP 77
Query: 82 RXDVPINDXEQMELICSPHR 23
R DV + D E+ + P R
Sbjct: 78 RSDVQLKDLEKWQNNLLPSR 97
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = -2
Query: 314 MVRMXVLSDALKSIHNA*K 258
MVRM VL+DALKSI+NA K
Sbjct: 1 MVRMNVLADALKSINNAEK 19
>AY208299-1|AAO48936.1| 130|Homo sapiens S15a protein.
Length = 130
Score = 124 bits (300), Expect = 7e-29
Identities = 60/80 (75%), Positives = 65/80 (81%)
Frame = -3
Query: 262 EKRGKRQVLIXPCSKVIVKFLTVMMKHGXIGEFEIVDDHRAGKIVVXXTGRLNKXGVISP 83
EKRGKRQVLI PCSKVIV+FLTVMMKHG IGEFEI+DDHRAGKIVV TGRLNK GVISP
Sbjct: 18 EKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISP 77
Query: 82 RXDVPINDXEQMELICSPHR 23
R DV + D E+ + P R
Sbjct: 78 RFDVQLKDLEKWQNNLLPSR 97
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = -2
Query: 314 MVRMXVLSDALKSIHNA*K 258
MVRM VL+DALKSI+NA K
Sbjct: 1 MVRMNVLADALKSINNAEK 19
>AB062400-1|BAB93487.1| 130|Homo sapiens OK/SW-cl.82 protein.
Length = 130
Score = 124 bits (300), Expect = 7e-29
Identities = 60/80 (75%), Positives = 65/80 (81%)
Frame = -3
Query: 262 EKRGKRQVLIXPCSKVIVKFLTVMMKHGXIGEFEIVDDHRAGKIVVXXTGRLNKXGVISP 83
EKRGKRQVLI PCSKVIV+FLTVMMKHG IGEFEI+DDHRAGKIVV TGRLNK GVISP
Sbjct: 18 EKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISP 77
Query: 82 RXDVPINDXEQMELICSPHR 23
R DV + D E+ + P R
Sbjct: 78 RFDVQLKDLEKWQNNLLPSR 97
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = -2
Query: 314 MVRMXVLSDALKSIHNA*K 258
MVRM VL+DALKSI+NA K
Sbjct: 1 MVRMNVLADALKSINNAEK 19
>X84407-1|CAA59127.1| 130|Homo sapiens ribosomal protein S15a
protein.
Length = 130
Score = 123 bits (297), Expect = 2e-28
Identities = 59/80 (73%), Positives = 65/80 (81%)
Frame = -3
Query: 262 EKRGKRQVLIXPCSKVIVKFLTVMMKHGXIGEFEIVDDHRAGKIVVXXTGRLNKXGVISP 83
EKRGKRQVLI PCSKVIV+FLT+MMKHG IGEFEI+DDHRAGKIVV TGRLNK GVISP
Sbjct: 18 EKRGKRQVLIRPCSKVIVRFLTLMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISP 77
Query: 82 RXDVPINDXEQMELICSPHR 23
R DV + D E+ + P R
Sbjct: 78 RFDVQLKDLEKWQNNLLPSR 97
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = -2
Query: 314 MVRMXVLSDALKSIHNA*K 258
MVRM VL+DALKSI+NA K
Sbjct: 1 MVRMNVLADALKSINNAEK 19
>X62691-1|CAA44568.1| 129|Homo sapiens ribosomal protein homologous
to yeast S24 protein.
Length = 129
Score = 93.5 bits (222), Expect = 2e-19
Identities = 49/80 (61%), Positives = 55/80 (68%)
Frame = -3
Query: 262 EKRGKRQVLIXPCSKVIVKFLTVMMKHGXIGEFEIVDDHRAGKIVVXXTGRLNKXGVISP 83
EKRGKR+ L+ LTVMMKHG IGEFEI+DDHRAGKIVV TGRLNK GVISP
Sbjct: 18 EKRGKRRCLLGRLQSHR-PVLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISP 76
Query: 82 RXDVPINDXEQMELICSPHR 23
R DV + D E+ + P R
Sbjct: 77 RFDVQLKDLEKWQNNLLPSR 96
Score = 33.9 bits (74), Expect = 0.17
Identities = 21/35 (60%), Positives = 23/35 (65%)
Frame = -2
Query: 314 MVRMXVLSDALKSIHNA*KAREKTSPHXALFQSHR 210
MVRM VL+DALKSI+NA K R K QSHR
Sbjct: 1 MVRMNVLADALKSINNAEK-RGKRRCLLGRLQSHR 34
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,452,774
Number of Sequences: 237096
Number of extensions: 570040
Number of successful extensions: 586
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2479134298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -