Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13f01
         (375 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   0.67 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   0.89 

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 0.67
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 127  QQSCQLCDHQRFQTLRXNRASSSLLKT 207
            QQS Q    Q+ QT+  N+A  S+L+T
Sbjct: 976  QQSQQSQQQQQQQTIVTNQAGKSILQT 1002


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 0.89
 Identities = 16/55 (29%), Positives = 21/55 (38%)
 Frame = +3

Query: 42  SSICSXSLMGTSKRGEMTPHLFSLPVXXTTILPAL*SSTISNSPMXPCFIITVKN 206
           S+ CS   +     G    H    P+      P L SST + SPM       V+N
Sbjct: 289 STTCSGHTVRCFTGGPRKSHESQCPMLQKLEKPVLSSSTTTTSPMTSTKSTIVRN 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,084
Number of Sequences: 438
Number of extensions: 1175
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)