Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13e24
         (777 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    25   0.89 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    25   0.89 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    25   0.89 
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    23   2.1  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    23   2.1  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   4.8  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    22   4.8  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    22   6.3  

>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 260 LPRPFMILGDFNSHHTSW 313
           +P P M L DF SH  +W
Sbjct: 202 VPPPLMFLQDFLSHQHAW 219


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 260 LPRPFMILGDFNSHHTSW 313
           +P P M L DF SH  +W
Sbjct: 435 VPPPLMFLQDFLSHQHAW 452


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 260 LPRPFMILGDFNSHHTSW 313
           +P P M L DF SH  +W
Sbjct: 435 VPPPLMFLQDFLSHQHAW 452


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 522 P*SFHFPETHATVIWRNIKRFRSAVNPSNALLLPIELADQFLDRL 656
           P +FH        +WRN++   S V  S  + L   L  + +D L
Sbjct: 109 PLAFHTLFISKDAVWRNLRTKLSPVFTSGKMKLMFPLMQECVDDL 153


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 156 KQLLCEGRGKEEKVLEFLMSRHTPP 82
           K L+CE  G+ E  L    S  TPP
Sbjct: 187 KNLICEIDGRHEFFLAEFKSAKTPP 211


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +2

Query: 341 YELLDILDMYSLCILN 388
           +E++D ++M+SL ILN
Sbjct: 675 HEIIDKIEMFSLQILN 690



 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +2

Query: 341 YELLDILDMYSLCILN 388
           +E++D ++M+SL ILN
Sbjct: 951 HEIIDKIEMFSLQILN 966



 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +2

Query: 341  YELLDILDMYSLCILN 388
            +E++D ++M+SL ILN
Sbjct: 1053 HEIIDKIEMFSLQILN 1068


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +2

Query: 341 YELLDILDMYSLCILN 388
           +E++D ++M+SL ILN
Sbjct: 334 HEIIDKIEMFSLQILN 349


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 101 IRNSSTFSSFPLPSHSNCFSVI 166
           IRN  T   F LP+  NC   +
Sbjct: 10  IRNRGTPPKFELPTTHNCLKKV 31


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,053
Number of Sequences: 336
Number of extensions: 3536
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)