Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13e24
(777 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript... 72 2e-14
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript... 72 2e-14
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript... 68 3e-13
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript... 66 1e-12
AB090815-2|BAC57906.1| 973|Anopheles gambiae reverse transcript... 66 2e-12
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript... 65 3e-12
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript... 62 2e-11
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ... 60 6e-11
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein. 59 1e-10
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript... 59 1e-10
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript... 57 7e-10
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript... 54 5e-09
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript... 53 1e-08
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript... 47 6e-07
AB090818-2|BAC57912.1| 988|Anopheles gambiae reverse transcript... 39 2e-04
AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adh... 25 2.6
AJ439060-12|CAD27763.1| 450|Anopheles gambiae putative tachykin... 25 3.5
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra... 24 6.0
>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
protein.
Length = 1154
Score = 72.1 bits (169), Expect = 2e-14
Identities = 47/125 (37%), Positives = 68/125 (54%), Gaps = 6/125 (4%)
Frame = +2
Query: 161 VIAAIVDGICFVSIYVPHPSL--QIFNEIKNLISVLPRPF---MILGDFNSHHTSWGSSV 325
++AA V GI F+S+Y P PSL Q + + + + +I GDFN+ HT WGS
Sbjct: 77 LVAAKVAGIDFISVYAP-PSLSPQEYERLLEAVELEASSHSHVVIAGDFNAWHTEWGSRR 135
Query: 326 SNSYGYELLDILDMYSLCILNSGS-PTRLTKPGEVISAIDLSICTPQLASSLSWSTLCST 502
+N G ELL ++++ L ILN+GS PT + + S ID++ TP L +W L
Sbjct: 136 NNLRGEELLQMVEVLGLSILNNGSAPTFIGRGAARPSVIDVTFATPSLVLHDTWEVL-DF 194
Query: 503 YNSDH 517
SDH
Sbjct: 195 ARSDH 199
>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
protein.
Length = 1173
Score = 72.1 bits (169), Expect = 2e-14
Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 5/124 (4%)
Frame = +2
Query: 161 VIAAIVDGICFVSIYV-PHPSLQIFNEIKNL--ISVLPRPFMILG-DFNSHHTSWGSSVS 328
++AA + GI F+S Y P ++ F E N I V P ++LG DFN+ H +WGS+ +
Sbjct: 75 LVAADIGGITFISCYASPRMTVAEFEEFLNAVEIEVSAHPNVVLGGDFNAWHEAWGSART 134
Query: 329 NSYGYELLDILDMYSLCILNSGSPTRLTKPGEV-ISAIDLSICTPQLASSLSWSTLCSTY 505
G ELL+ ++ L +LN G+ + T G S ID++ +P + +W L S +
Sbjct: 135 KRKGEELLNTVEQLGLIVLNRGNTSTFTGRGIAGESVIDVTFASPSIVRYNTWEVLKSYW 194
Query: 506 NSDH 517
SDH
Sbjct: 195 YSDH 198
>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
protein.
Length = 1099
Score = 68.1 bits (159), Expect = 3e-13
Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 6/130 (4%)
Frame = +2
Query: 146 SNCFSVIAAIVDGICFVSIYVP--HPS--LQIFNEIKNLISVLPRPFMILGDFNSHHTSW 313
SN ++AA + G F+S Y P P+ + F E L ++ +I GDFN+ H W
Sbjct: 73 SNTPGLVAAEIGGTTFLSCYAPPRQPTDEFERFIEAVQLETLTHSQVVIAGDFNAWHVEW 132
Query: 314 GSSVSNSYGYELLDILDMYSLCILNSGSPTRLTKPG-EVISAIDLSICTPQLASSLSWST 490
GS ++ G ELL + L +LN G+ + G S +D++ TP +A +W+
Sbjct: 133 GSERNSEKGEELLSAIQQLDLVVLNQGTTSTFDGNGAATASIVDVAFATPTIAQPGTWN- 191
Query: 491 LCSTYN-SDH 517
+C Y+ SDH
Sbjct: 192 VCGDYSYSDH 201
>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
protein.
Length = 1173
Score = 66.1 bits (154), Expect = 1e-12
Identities = 45/145 (31%), Positives = 70/145 (48%), Gaps = 7/145 (4%)
Frame = +2
Query: 122 SSFPLPS--HSNCFSVIAAIVDGICFVSIYV----PHPSLQIFNEIKNLISVLPRPFMIL 283
SS+P+ S ++AA + GI F+S Y P + F L + +I
Sbjct: 82 SSYPIQRVLRSAVPGIVAAQIGGIVFISCYARPRRPEEDYEGFLAAVQLEASTHSQVVID 141
Query: 284 GDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSGS-PTRLTKPGEVISAIDLSICTP 460
GDFN+ HT WGS+ ++ G +LL ++ L ++NSG+ PT + + S ID+ TP
Sbjct: 142 GDFNAWHTEWGSARNSQRGEDLLQLIQSVQLQVINSGNEPTFIGRGAATSSVIDVCFATP 201
Query: 461 QLASSLSWSTLCSTYNSDHYPIIIS 535
+A +W + SDH I S
Sbjct: 202 SIARPETWE-VHEFARSDHQLITYS 225
>AB090815-2|BAC57906.1| 973|Anopheles gambiae reverse transcriptase
protein.
Length = 973
Score = 65.7 bits (153), Expect = 2e-12
Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Frame = +2
Query: 164 IAAIVDGICFVSIYVPHP-SLQIFNEIKNLIS---VLPRPFMILGDFNSHHTSWGSSVSN 331
+ A+++ I F S Y P L+ F E+ IS P +I GDFN+ T WGS +N
Sbjct: 75 VIAVINKITFCSCYAPPRWDLEKFEEMLKRISDEVYDVNPIIISGDFNAWATEWGSKSTN 134
Query: 332 SYGYELLDILDMYSLCILNSGSPTRLTKPGEVISAIDLSICTPQLASSLSWSTLCSTYNS 511
+ G +L+ +L ++N G + S IDL+ C+P LASS++W + S
Sbjct: 135 ARGNAVLEHFSRLNLVLVNVGFCPTFVRNSRT-SIIDLTFCSPALASSMNWRVSNAYTLS 193
Query: 512 DH 517
DH
Sbjct: 194 DH 195
>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
protein.
Length = 1201
Score = 64.9 bits (151), Expect = 3e-12
Identities = 42/126 (33%), Positives = 65/126 (51%), Gaps = 7/126 (5%)
Frame = +2
Query: 161 VIAAIVDGICFVSIYVPHPSLQIFNEIKNLISVLPRP------FMILGDFNSHHTSWGSS 322
++AA V GI F+S+Y P PSL +E + L+ + ++ GDFN+ H WGS
Sbjct: 140 LVAAQVAGITFISVYAP-PSLSA-HEFERLLGAIELEAASHSRVVVAGDFNAWHEEWGSG 197
Query: 323 VSNSYGYELLDILDMYSLCILNSG-SPTRLTKPGEVISAIDLSICTPQLASSLSWSTLCS 499
+ G ELL ++ L ILN G PT + + S ID+S + ++ +WS +
Sbjct: 198 RNGQRGIELLQTVETLGLSILNQGRKPTFIGRGFAASSVIDVSFASREIVRPDTWSVIPF 257
Query: 500 TYNSDH 517
+ SDH
Sbjct: 258 S-RSDH 262
>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
protein.
Length = 1248
Score = 61.7 bits (143), Expect = 2e-11
Identities = 48/131 (36%), Positives = 67/131 (51%), Gaps = 12/131 (9%)
Frame = +2
Query: 161 VIAAIVDGICFVSIYV-PHPSLQIFNEIKNLISVLPR--PFMIL-GDFNSHHTSWGSSVS 328
++ A V+GI V YV P+ ++ F EI I +L R P ++L GDFN+ HT+WGS +
Sbjct: 75 IVVADVNGITIVYYYVKPNVGVRQFEEIMERIDILIRGHPRVLLAGDFNAWHTAWGSERT 134
Query: 329 NSYGYELLDILDMYSLCILNSGSPTRLTKPGEV-ISAIDL-----SICTPQLA--SSLSW 484
G LL +++ L +LN G+ G S ID+ SIC P LA S+ W
Sbjct: 135 KPKGIALLQLVNGLGLEVLNIGTSHTFRGCGSARPSRIDVAFASPSICRPDLAANSATCW 194
Query: 485 STLCSTYNSDH 517
L SDH
Sbjct: 195 RILSRYSYSDH 205
Score = 24.2 bits (50), Expect = 4.6
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -1
Query: 477 REDANWGVQMDRSMALITS 421
+ + NW V D+S+A++TS
Sbjct: 40 QNNGNWVVDRDKSVAIVTS 58
>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
gambiae RT2 retroposon. ).
Length = 1222
Score = 60.5 bits (140), Expect = 6e-11
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 6/130 (4%)
Frame = +2
Query: 146 SNCFSVIAAIVDGICFVSIYVPHPSLQI-----FNEIKNLISVLPRPFMILGDFNSHHTS 310
S ++AA + G+ F+S Y P PSL + F E L ++ GDFN+ H
Sbjct: 83 SEAQGLVAAQIGGVVFISCYAP-PSLNLAEFERFLEAIELEGFSHPQVVVAGDFNARHEE 141
Query: 311 WGSSVSNSYGYELLDILDMYSLCILNSGSPTRLTKPGEVI-SAIDLSICTPQLASSLSWS 487
WGS + G EL +++ L ++N G G + S +D++ +P +A +W
Sbjct: 142 WGSPRTCDRGEELHGMVEQLGLIVINQGREYTFVGNGVALPSIVDVAFASPSIARPDTWV 201
Query: 488 TLCSTYNSDH 517
S SDH
Sbjct: 202 VSTSYTASDH 211
>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
Length = 1212
Score = 59.3 bits (137), Expect = 1e-10
Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 6/131 (4%)
Frame = +2
Query: 161 VIAAIVDGICFVSIYVPHPSL--QIFNEIKNLISVLPRPF---MILGDFNSHHTSWGSSV 325
+IAA V GI F+S Y P PSL + F E I + + ++ GDFN+ H WGS
Sbjct: 134 LIAAKVGGITFLSCYAP-PSLSREGFAEFVEAIELEAQSHPQVVVAGDFNAWHEEWGSRR 192
Query: 326 SNSYGYELLDILDMYSLCILNSGSPTRLTKPG-EVISAIDLSICTPQLASSLSWSTLCST 502
SN G LL+ L ++N G+ G S +D++ + +A +W +
Sbjct: 193 SNERGEVLLEASQQLGLLLMNRGNVATFVGNGVATASVVDVTFASSSIAQPSTWLVRNTD 252
Query: 503 YNSDHYPIIIS 535
SDH I S
Sbjct: 253 TRSDHRYITYS 263
>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
protein.
Length = 1049
Score = 59.3 bits (137), Expect = 1e-10
Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 6/130 (4%)
Frame = +2
Query: 146 SNCFSVIA-AIVDGICFVSIYVPHPS--LQIFNE-IKNLISVLP--RPFMILGDFNSHHT 307
SN F A V+G+ F S Y P PS L+ F+ + NL++ L RP +I GDFN+
Sbjct: 66 SNTFEGFCIAEVNGVFFCSCYAP-PSWELERFHVMLDNLVAELDGHRPLVIAGDFNAWAV 124
Query: 308 SWGSSVSNSYGYELLDILDMYSLCILNSGSPTRLTKPGEVISAIDLSICTPQLASSLSWS 487
WGS +NS G +L+ + + N+G+ + + S +D++ C+ L+ L+W
Sbjct: 125 EWGSKRTNSRGDAVLESFARLGVTLGNAGTTPTFNR-NKRTSIVDITFCSTTLSERLNWR 183
Query: 488 TLCSTYNSDH 517
+ SDH
Sbjct: 184 VSDALTLSDH 193
>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
protein.
Length = 1222
Score = 56.8 bits (131), Expect = 7e-10
Identities = 39/133 (29%), Positives = 69/133 (51%), Gaps = 5/133 (3%)
Frame = +2
Query: 86 GVCLLIRNSSTFSSFPLPSHSNCFSVIAAIVDGICFVSIYV-PHPSLQIFNEIKNLISVL 262
G +I +S T+ + S + + AA ++ + F+ YV P + F E+ I VL
Sbjct: 51 GKVAIIASSETYPVQQVVSVTQS-GIAAARINDVLFICCYVSPSAGVSEFEEVMQRIDVL 109
Query: 263 PR--PFMIL-GDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSG-SPTRLTKPGEVI 430
R P ++ GD N+ HT+WGS +N+ G ++ ++D L +LN+G +PT L
Sbjct: 110 ARGHPRVVFAGDLNAWHTAWGSCRTNAKGEAVVQLVDSLGLEVLNTGTAPTFLGNGVARP 169
Query: 431 SAIDLSICTPQLA 469
S +D++ + +A
Sbjct: 170 SVVDVAFASSSIA 182
>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
protein.
Length = 1022
Score = 54.0 bits (124), Expect = 5e-09
Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 10/135 (7%)
Frame = +2
Query: 161 VIAAIVDGICFVSIYVPHP-SLQIFNEI-KNLISVLP--RPFMILGDFNSHHTSWGSSVS 328
++A V GI VS Y P ++Q F E+ N++ + F++ GDFN+ +SW +++
Sbjct: 75 MLAVEVGGILIVSAYAPPSWTVQEFEELLDNIVLTVSGSSKFVVAGDFNAWSSSWANTLG 134
Query: 329 ------NSYGYELLDILDMYSLCILNSGSPTRLTKPGEVISAIDLSICTPQLASSLSWST 490
G LL + ++N+G T +T E SAIDL+ + L + W
Sbjct: 135 ARGESQRLRGDTLLAAFAGLEMVLMNNGQDTFVTP--ERKSAIDLTFVSQSLMETTGWEV 192
Query: 491 LCSTYNSDHYPIIIS 535
L NSDH I+I+
Sbjct: 193 LPDYMNSDHIGILIT 207
>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
protein.
Length = 1168
Score = 52.8 bits (121), Expect = 1e-08
Identities = 32/86 (37%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Frame = +2
Query: 143 HSNCFSVIAAIVDGICFVSIYV-PHPSLQIFNEIKNLISVLPRP---FMILGDFNSHHTS 310
H V+AA V G VS YV P + F I I ++ R ++ GDFN+ H
Sbjct: 70 HRQTLGVVAADVGGTTIVSCYVSPQTGVPEFRSIMEKIDLIVRGCSRVLLAGDFNAMHLD 129
Query: 311 WGSSVSNSYGYELLDILDMYSLCILN 388
WGSS + G ELL + D L +LN
Sbjct: 130 WGSSRTCPKGLELLQLADNLGLVLLN 155
>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
protein.
Length = 1009
Score = 47.2 bits (107), Expect = 6e-07
Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 10/123 (8%)
Frame = +2
Query: 194 VSIYVPHP-SLQIFN-EIKNLISVLP--RPFMILGDFNSHHTSWGSSVSNS------YGY 343
VS+Y P S++ F + N + + F+I GDFN+ SW + + G
Sbjct: 84 VSVYAPPRFSMEEFQIMLDNTVMAVTGIHKFVIGGDFNAWSASWNNQLGERGETQKRRGE 143
Query: 344 ELLDILDMYSLCILNSGSPTRLTKPGEVISAIDLSICTPQLASSLSWSTLCSTYNSDHYP 523
+L +LN GS PG S +DL+ + +A S W L S NSDH
Sbjct: 144 LVLSTFAQIDAILLNDGSTPTYVGPGRT-SVVDLTFASRTVARSFKWEVLSSYMNSDHRA 202
Query: 524 III 532
I I
Sbjct: 203 IRI 205
>AB090818-2|BAC57912.1| 988|Anopheles gambiae reverse transcriptase
protein.
Length = 988
Score = 39.1 bits (87), Expect = 2e-04
Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 13/128 (10%)
Frame = +2
Query: 182 GICFVSIYVPHPSLQI-FNEIKN----LISVLPR--PFMILGDFNSHHTSWG------SS 322
GI F S+Y+P + E K ++S+LPR +I G N +WG
Sbjct: 82 GIVFCSVYLPPVGSDLTVEEYKRKWTEIVSMLPRNRDTVIGGYVNVWSGAWGMERRPNDG 141
Query: 323 VSNSYGYELLDILDMYSLCILNSGSPTRLTKPGEVISAIDLSICTPQLASSLSWSTLCST 502
S G ++D L +LN G+ + S +D+S C+P L +W +C
Sbjct: 142 ERVSRGGVVMDAAAALGLVLLNQGNQSTWIGANGRNSIVDVSFCSPSLVGDNNW-RVCDE 200
Query: 503 YNSDHYPI 526
SDH I
Sbjct: 201 TPSDHNTI 208
>AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adhesion
protein protein.
Length = 1881
Score = 25.0 bits (52), Expect = 2.6
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = +3
Query: 675 LNDPILSYKQYNSDAPSSLN--LTFTLVELKGV 767
+NDPI+ + ++D P++ N L+F +V+ G+
Sbjct: 1186 INDPIVKLRATDADDPTNGNGQLSFDIVDPSGI 1218
>AJ439060-12|CAD27763.1| 450|Anopheles gambiae putative tachykinin
receptor protein.
Length = 450
Score = 24.6 bits (51), Expect = 3.5
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 485 STLCSTYNSDHYPIIISFP*NTCYCHMAKYQKI*ISCQSF*RIVA 619
STL T+N Y + + +P T YC ++++ I C S ++A
Sbjct: 135 STLNVTFNYT-YMLYLDWPFGTMYCKISQFVAILSICASVFTLMA 178
>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
transcriptase protein.
Length = 1049
Score = 23.8 bits (49), Expect = 6.0
Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 13/109 (11%)
Frame = +2
Query: 47 YSCLREDRADGYGGVCLLIRNSSTFSSFPLPSHSNCFSVIAAIVD----GICFVSIYVPH 214
Y C R G +L+ S+ + S LPS I V + + +Y+P
Sbjct: 133 YRCDRSLSGSSSRGGGVLLAVSNAYESIELPSRDRSLEYICVRVACNNAHLYVMVVYIPP 192
Query: 215 PSLQIFNEIKNL--------ISVLPRPFM-ILGDFNSHHTSWGSSVSNS 334
+ +++L + + P + ++GDFN SW ++ +S
Sbjct: 193 QLSSEISTLRSLHDCISSFTLRLKPSDLLFVIGDFNQPSISWSTADPSS 241
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 756,255
Number of Sequences: 2352
Number of extensions: 15783
Number of successful extensions: 54
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81081585
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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