Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13e24
(777 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 78 1e-14
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 78 1e-14
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 62 1e-09
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 58 2e-08
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 58 2e-08
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 55 9e-08
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 55 1e-07
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 54 2e-07
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 54 3e-07
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 52 7e-07
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 52 9e-07
M38643-2|AAA28940.1| 192|Drosophila melanogaster protein ( D.me... 45 1e-04
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 39 0.009
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 37 0.027
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 37 0.027
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 37 0.027
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 37 0.036
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 37 0.036
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 37 0.036
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 37 0.036
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 36 0.047
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 36 0.062
BT010287-1|AAQ23605.1| 831|Drosophila melanogaster LD40663p pro... 30 4.1
AE013599-2854|AAF57580.2| 831|Drosophila melanogaster CG7417-PA... 30 4.1
AE014134-3392|AAF53993.2| 241|Drosophila melanogaster CG2042-PA... 29 7.1
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 78.2 bits (184), Expect = 1e-14
Identities = 50/167 (29%), Positives = 76/167 (45%), Gaps = 2/167 (1%)
Frame = +2
Query: 47 YSCLREDRADGYGGVCLLIRNSSTFSSFPLPSHSNCFSVIAAIVDGICFVSIYVPHPSLQ 226
Y L + +GGV LL+ S + + ++ + S Y+ P+
Sbjct: 51 YKLLTNIATNRFGGVRLLVHKSIQHTVLNITIDIEAIAINIESKLKLNIFSTYIS-PTKN 109
Query: 227 IFNE-IKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSGSPT 403
I N+ + N ++ P +I GDFN H WGS +N G +D L +LN SPT
Sbjct: 110 ITNQTLHNTFNIQQTPSLITGDFNGWHHPWGSPTTNKRGKITHRFIDNMHLILLNDKSPT 169
Query: 404 RLTKPGEVISAIDLSICTPQLASSLSWSTLCSTYNSDHYPIIIS-FP 541
+ + IDL++C+P LA W L + SDH+PII + FP
Sbjct: 170 HFS-THNTYTHIDLTLCSPILAPHAKWKILNDLHGSDHFPIITTLFP 215
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 78.2 bits (184), Expect = 1e-14
Identities = 45/149 (30%), Positives = 78/149 (52%)
Frame = +2
Query: 86 GVCLLIRNSSTFSSFPLPSHSNCFSVIAAIVDGICFVSIYVPHPSLQIFNEIKNLISVLP 265
G+ +LI+ + + + S C ++ I V+ Y+P + ++I ++ L
Sbjct: 68 GIGVLIKRNVPHTYRNINSSILCSALQLNFEQVINIVNAYIPPSQIFSSSDISEILQNLN 127
Query: 266 RPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSGSPTRLTKPGEVISAIDL 445
++LGD NS WGS +N+ G ++ ++ SL +LN GSPT L+ + ID+
Sbjct: 128 GSTILLGDLNSWSPLWGSPRTNTRGKKIETVILENSLIVLNDGSPTHLS-THNTFTHIDI 186
Query: 446 SICTPQLASSLSWSTLCSTYNSDHYPIII 532
S+ +PQ+A SWS + + SDH+PI I
Sbjct: 187 SLISPQIAHMCSWSISDNLHGSDHFPITI 215
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 61.7 bits (143), Expect = 1e-09
Identities = 54/204 (26%), Positives = 86/204 (42%), Gaps = 22/204 (10%)
Frame = +2
Query: 2 SETWLKPDFVFKIPGYSCLREDRADGYGG-VCLLIRNSSTFSSFP-LPSH--SNC-FSVI 166
+ETWL F IP Y+ R DR + GG V + + N+ P + SH N +
Sbjct: 44 NETWLTHSDRFNIPEYTIYRNDRKESRGGGVAIAVSNTLIHEQIPCIKSHVIENVGIQIN 103
Query: 167 AAIVDGICFVSIYVPHPSLQIF----------NEIKNL-------ISVLPRPFMILGDFN 295
+ SIY + + N +K+L IS + F+I GDFN
Sbjct: 104 TDSNSSLKIYSIYFAGNTSKCIPSSCDLSWDHNHLKSLYRSDLLKISQINGNFLICGDFN 163
Query: 296 SHHTSWGSSVSNSYGYELLDILDMYSLCILNSGSPTRLTKPGEVISAIDLSICTPQLASS 475
S H +W + +N +G L ++ D+ IL PT + A L +C + +
Sbjct: 164 SRHRAWKCTRANGWGKILNELSDLGKFSILYPTQPTYIPH-NHKAKASTLDLCLTNIPNQ 222
Query: 476 LSWSTLCSTYNSDHYPIIISFP*N 547
L+ + +SDH P++I + N
Sbjct: 223 LANPAVMQELSSDHLPVVIKYSTN 246
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 57.6 bits (133), Expect = 2e-08
Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 9/186 (4%)
Frame = +2
Query: 2 SETWLKPDFVFKIPGYSCLREDRADG--YGGVCLLIRNSSTFSSFP--LPSHSNCFSVIA 169
SET L + F+I Y + DG +GG +LIRN + +H S+
Sbjct: 36 SETHLTSKYNFQIRDYHFYGTNHPDGKAHGGTAILIRNRMKHHFYKEFAENHLQATSINI 95
Query: 170 AIVDG--ICFVSIYVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGY 343
+ D + ++Y P + + + L F+ GD+N+ HT WGS + N G
Sbjct: 96 QLDDNTLLTLAAVYCPPRFTVLEAQFLDFFQALGPHFIAAGDYNAKHTHWGSRLVNPKGK 155
Query: 344 ELLD--ILDMYSLCILNSGSPTRLTKP-GEVISAIDLSICTPQLASSLSWSTLCSTYNSD 514
+L I L ++ GSPT ++ ID ++ T ++ SL + +SD
Sbjct: 156 QLYKTIIKATNKLDHVSPGSPTYWPSDLNKLPDLIDFAV-TKNISRSLVKAECLPDLSSD 214
Query: 515 HYPIII 532
H P++I
Sbjct: 215 HSPVLI 220
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 57.6 bits (133), Expect = 2e-08
Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 11/189 (5%)
Frame = +2
Query: 2 SETWLKPDFVFKIPGYSCLREDRA----DGYGGVCLLIRNSSTFSSFPL----PSHSNCF 157
+E LK KI GY+ R + GGV + +R +T FP H
Sbjct: 36 TELRLKRGETVKIYGYAYYPAYRPSLNNNSVGGVAVFVR--TTLRHFPQRVIETRHIQLS 93
Query: 158 SV-IAAIVDGICFVSIYVPHPSLQIFNE-IKNLISVLPRPFMILGDFNSHHTSWGSSVSN 331
SV +A + + F +IY PS +I ++I + +++ GD+N+ H WG + ++
Sbjct: 94 SVKVATGLGDLQFSAIYCS-PSTRIEERHFTDIIRACGQRYLVGGDWNARHWLWGDTCNS 152
Query: 332 SYGYELLDILDMYSLCILNSGSPTRLT-KPGEVISAIDLSICTPQLASSLSWSTLCSTYN 508
G EL + L + IL +GSPTR P S ID ++ + L+ T +
Sbjct: 153 PRGRELAEALSVTGAKILATGSPTRYPYVPSHTPSCIDFAV-YHGIPDHLATITQSWDLD 211
Query: 509 SDHYPIIIS 535
SDH P+IIS
Sbjct: 212 SDHLPLIIS 220
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 55.2 bits (127), Expect = 9e-08
Identities = 44/175 (25%), Positives = 77/175 (44%), Gaps = 6/175 (3%)
Frame = +2
Query: 29 VFKIPGYSCLREDRADGYGGVCLLIRNSSTFSSFPLPSHSNCF-----SVIAAIVDGICF 193
+F Y+ + GG +LI+NS + FPL + +VI + I F
Sbjct: 48 LFGFVAYTANDPSGGNAKGGAAILIKNS--LAHFPLTPIATAKVQLAPAVIETALGPISF 105
Query: 194 VSIYVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYS 373
++Y P +E K+++ F++ GD+N+ H WG+ SN G L +++
Sbjct: 106 GAVYCPPRFAWTTDEFKDILEEFQTKFIVAGDWNASHWLWGAGRSNQRGIALANLVLNSE 165
Query: 374 LCILNSGSPTRLTKPGEVISA-IDLSICTPQLASSLSWSTLCSTYNSDHYPIIIS 535
+ L +G PTR ID ++ L + S + +SDH P++I+
Sbjct: 166 VDSLATGGPTRYPYGCRGSPGYIDFALTKGVLGIHANISAVVE-LSSDHLPLVIT 219
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 54.8 bits (126), Expect = 1e-07
Identities = 50/194 (25%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
Frame = +2
Query: 32 FKIPGYSCLREDRADGYGG-VCLLIRNSSTFSSFP-LPSH--SNC-FSVIAAIVDGICFV 196
F IP Y+ R DR + GG V + + N+ P + SH N + +
Sbjct: 2 FNIPEYTIYRNDRKESRGGGVAIAVSNTLIHEQIPCIKSHVIENVGIQINTDSNSSLKIY 61
Query: 197 SIYVPHPSLQIF----------NEIKNL-------ISVLPRPFMILGDFNSHHTSWGSSV 325
SIY + + N +K+L IS + F+I GDFNS H +W +
Sbjct: 62 SIYFAGNTSKCIPSSCDLSWDHNHLKSLYRSDLLKISQINGNFLICGDFNSRHRAWKCTR 121
Query: 326 SNSYGYELLDILDMYSLCILNSGSPTRLTKPGEVISAIDLSICTPQLASSLSWSTLCSTY 505
+N +G L ++ D+ IL PT + A L +C + + L+ +
Sbjct: 122 ANGWGKILNELSDLGKFSILYPTQPTYIPH-NHKAKASTLDLCLTNIPNQLANPAVMQEL 180
Query: 506 NSDHYPIIISFP*N 547
+SDH P++I + N
Sbjct: 181 SSDHLPVVIKYSTN 194
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 54.0 bits (124), Expect = 2e-07
Identities = 50/188 (26%), Positives = 86/188 (45%), Gaps = 10/188 (5%)
Frame = +2
Query: 2 SETWLKPDFVFKIPGYSCLREDRADG--YGGVCLLIRNSST---FSSFPLPSHSNCFSVI 166
SET L F IPGY + DG +GG +LIRN ++F ++ S+
Sbjct: 36 SETHLTNKNNFHIPGYLFYGTNHPDGKAHGGTGILIRNRIKHHHLNNFD-KNYLQSTSIA 94
Query: 167 AAIVDG-ICFVSIYVPHPSLQIF-NEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYG 340
+ +G ++Y P P I ++ + L F+ GD+N+ HT WGS + + G
Sbjct: 95 LQLNNGSTTLAAVYCP-PRFPISEDQFMEFFNTLGDRFIAAGDYNAKHTHWGSRLVSPKG 153
Query: 341 YELLDILDM--YSLCILNSGSPTRL-TKPGEVISAIDLSICTPQLASSLSWSTLCSTYNS 511
+L + L L ++ G PT P ++ ID +I T + ++ + + +S
Sbjct: 154 KQLYNALTKPENKLDYVSPGKPTYWPADPRKIPDLIDFAI-TKHVPRNMVTAEALADLSS 212
Query: 512 DHYPIIIS 535
DH P+ ++
Sbjct: 213 DHSPVFLN 220
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 53.6 bits (123), Expect = 3e-07
Identities = 50/188 (26%), Positives = 85/188 (45%), Gaps = 10/188 (5%)
Frame = +2
Query: 2 SETWLKPDFVFKIPGYSCLREDRADG--YGGVCLLIRNSST---FSSFPLPSHSNCFSVI 166
SET L F IPGY + DG +GG +LIRN ++F ++ S+
Sbjct: 36 SETHLTNKNNFHIPGYLFYGTNHPDGKAHGGTGILIRNRIKHHHLNNFD-KNYLQSTSIA 94
Query: 167 AAIVDG-ICFVSIYVPHPSLQIF-NEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYG 340
+ +G ++Y P P I ++ + L F+ GD+N+ HT WGS + G
Sbjct: 95 LQLNNGSTTLAAVYCP-PRFPISEDQFMEFFNTLGDRFIAAGDYNAKHTHWGSRLVTPKG 153
Query: 341 YELLDILDM--YSLCILNSGSPTRL-TKPGEVISAIDLSICTPQLASSLSWSTLCSTYNS 511
+L + L L ++ G PT P ++ ID +I T + ++ + + +S
Sbjct: 154 KQLYNALTKPENKLDYVSPGKPTYWPADPRKIPDLIDFAI-TKHVPRNMVTAEALADLSS 212
Query: 512 DHYPIIIS 535
DH P+ ++
Sbjct: 213 DHSPVFLN 220
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 52.4 bits (120), Expect = 7e-07
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 5/121 (4%)
Frame = +2
Query: 170 AIVDGICFVSIYVP-HPSLQIFNE-IKNLISVLP--RPFMILGDFNSHHTSWGSSVSNSY 337
A + GI F S Y P S + F + ++ L++ RP +I GD N+ T WGS +SN+
Sbjct: 82 AKIRGIHFYSCYAPPSDSPEQFEDMLEKLVNHASGRRPTVIGGDLNAWATEWGSRISNTR 141
Query: 338 GYELLDILDMYSLCILNSG-SPTRLTKPGEVISAIDLSICTPQLASSLSWSTLCSTYNSD 514
G ++D +++ L +LN G PT G S ID++ + L + +W SD
Sbjct: 142 GRAVIDAMNLLDLVLLNDGFKPTFNNDRG--TSFIDVTFVSRVLVAGSNWMVHEDITLSD 199
Query: 515 H 517
H
Sbjct: 200 H 200
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 52.0 bits (119), Expect = 9e-07
Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 6/182 (3%)
Frame = +2
Query: 2 SETWLKPDFVFKIPGYSCLREDRADGY--GGVCLLIRNSSTFSSF-PLPSHSNCFSVI-- 166
+ET ++ +PGY G GG ++I++ S P+ ++ + +
Sbjct: 38 TETHMRVGQRIYLPGYLMYHAHHPSGNSRGGSAVIIKSRLCHSPLTPISTNDRQIARVHL 97
Query: 167 AAIVDGICFVSIYVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYE 346
V + ++Y+P I ++ K++ + L F+ GD+N+ H WG+ S G
Sbjct: 98 QTSVGTVTVAAVYLPPAERWIVDDFKSMFAALGNKFIAGGDYNAKHAWWGNPRSCPRGKM 157
Query: 347 LLDILDMYSLCILNSGSPTRLT-KPGEVISAIDLSICTPQLASSLSWSTLCSTYNSDHYP 523
L +++ +L +G PT + P SA+D I L TL +SDH P
Sbjct: 158 LQEVIAHGQYQVLATGEPTFYSYNPLLTPSALDFFITCGYGMGRLDVQTL-QELSSDHLP 216
Query: 524 II 529
I+
Sbjct: 217 IL 218
>M38643-2|AAA28940.1| 192|Drosophila melanogaster protein (
D.melanogaster mobileelement jockey gag-specific protein
gene, complete cds.).
Length = 192
Score = 44.8 bits (101), Expect = 1e-04
Identities = 31/139 (22%), Positives = 62/139 (44%), Gaps = 5/139 (3%)
Frame = +2
Query: 2 SETWLKPDFVFKIPGYSCLREDRADGY--GGVCLLIRNSSTFSSF-PLPSHSNCFSVI-- 166
+ET ++ +PGY G GG ++I++ S P+ ++ + +
Sbjct: 38 TETHMRVGQRIYLPGYLMYHAHHPSGNSRGGSAVIIKSRLCHSPLTPISTNDRQIARVHL 97
Query: 167 AAIVDGICFVSIYVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYE 346
V + ++Y+P I ++ K++ + L F+ GD+N+ H WG+ S G
Sbjct: 98 QTSVGTVTVAAVYLPPAERWIVDDFKSMFAALGNKFIAGGDYNAKHAWWGNPRSCPRGKM 157
Query: 347 LLDILDMYSLCILNSGSPT 403
L +++ +L +G PT
Sbjct: 158 LQEVIAHGQYQVLATGEPT 176
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 38.7 bits (86), Expect = 0.009
Identities = 48/184 (26%), Positives = 75/184 (40%), Gaps = 18/184 (9%)
Frame = +2
Query: 35 KIPGY-SCLREDRADGYGGVCLLIRNSSTFSSFPLPSHSNCFSVIAAIV--------DGI 187
++PGY + L ++ A G I NSS P C ++ + I
Sbjct: 66 ELPGYFTYLAQNPASSKRGGVATIVNSSLRHMALEPIEKECIQSAPIVLLPENNRRSEMI 125
Query: 188 CFVSIYVPHPSLQI----FNEIKNLISVL---PRPFMILGDFNSHHTSWGSSVSNSYGYE 346
S+Y P PSL F ++ N ++ GD+N+ H WG + G
Sbjct: 126 VIASVYCP-PSLSWSPHHFTDVLNFAEKTMGGQTKLILCGDWNAKHRQWGCIRACQRGAA 184
Query: 347 LLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDLSICTPQLASSLSWSTLCSTYNSDHY 520
L D + S+ I+ +GS T + SAID SIC +L + + +SDH
Sbjct: 185 LYDAIQADSMAEIVATGSATHFPHDTRKSPSAIDFSIC-KRLGRYEKRISSSAHLSSDHL 243
Query: 521 PIII 532
PI++
Sbjct: 244 PILL 247
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 37.1 bits (82), Expect = 0.027
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Frame = +2
Query: 224 QIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYEL-LDILDMYSLCILNSGSP 400
++FN + L+ + F++ GD+N H WG+ +S + G L IL L I+ +G
Sbjct: 137 KLFNHFEMLLDGKSK-FILGGDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGHA 195
Query: 401 TRLT-KPGEVISAIDLSICTPQLASSL-SWSTLCSTYNSDHYPIII 532
T + SA+D +IC L ++ST +SDH PI I
Sbjct: 196 THFPFDKKKQPSALDFAICKGFHTQKLKTYST--DELSSDHLPIQI 239
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 37.1 bits (82), Expect = 0.027
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Frame = +2
Query: 224 QIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYEL-LDILDMYSLCILNSGSP 400
++FN + L+ + F++ GD+N H WG+ +S + G L IL L I+ +G
Sbjct: 137 KLFNHFEMLLDGKSK-FILGGDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGHA 195
Query: 401 TRLT-KPGEVISAIDLSICTPQLASSL-SWSTLCSTYNSDHYPIII 532
T + SA+D +IC L ++ST +SDH PI I
Sbjct: 196 THFPFDKKKQPSALDFAICKGFHTQKLKTYST--DELSSDHLPIQI 239
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 37.1 bits (82), Expect = 0.027
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Frame = +2
Query: 224 QIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYEL-LDILDMYSLCILNSGSP 400
++FN + L+ + F++ GD+N H WG+ +S + G L IL L I+ +G
Sbjct: 137 KLFNHFEMLLDGKSK-FILGGDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGHA 195
Query: 401 TRLT-KPGEVISAIDLSICTPQLASSL-SWSTLCSTYNSDHYPIII 532
T + SA+D +IC L ++ST +SDH PI I
Sbjct: 196 THFPFDKKKQPSALDFAICKGFHTQKLKTYST--DELSSDHLPIQI 239
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 36.7 bits (81), Expect = 0.036
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 3/132 (2%)
Frame = +2
Query: 146 SNCFSVIAAIVDGICFVSI-YVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSS 322
+N S + I C S+ ++PH + N + + + F++ GD+N+ H WG +
Sbjct: 106 NNRRSEMIVIASVYCPPSLRWLPHHFTDVLNFAEKTLGGQTK-FILCGDWNAKHRQWGCT 164
Query: 323 VSNSYGYELLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDLSICTPQLASSLSWSTLC 496
+ G L + + S I+ +G T + SAID SIC L +
Sbjct: 165 RACQRGTALYEAVQADSTAEIIATGCATHFPHDTRKNPSAIDFSIC-KGLGRFEKRISSG 223
Query: 497 STYNSDHYPIII 532
+ +SDH PI++
Sbjct: 224 ADLSSDHLPILL 235
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 36.7 bits (81), Expect = 0.036
Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 5/147 (3%)
Frame = +2
Query: 146 SNCFSVIAAIVDGICFVSI-YVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSS 322
+N S + I C S+ + PH + N + + + F++ GD+N+ H WG +
Sbjct: 106 NNRRSEMIVIASVYCPPSLSWSPHHFTDVLNFAEKTLGGQTK-FILCGDWNAKHRQWGCT 164
Query: 323 VSNSYGYELLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDLSIC--TPQLASSLSWST 490
+ G L + + + I+ +G T + SAID SIC +L +S S
Sbjct: 165 RACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSICKGLGRLEKRISSS- 223
Query: 491 LCSTYNSDHYPIIISFP*NTCYCHMAK 571
+ +SDH PI++ +T + K
Sbjct: 224 --ADLSSDHLPILLEINLDTSTLFLQK 248
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 36.7 bits (81), Expect = 0.036
Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 5/147 (3%)
Frame = +2
Query: 146 SNCFSVIAAIVDGICFVSI-YVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSS 322
+N S + I C S+ + PH + N + + + F++ GD+N+ H WG +
Sbjct: 68 NNRRSEMIVIASVYCPPSLSWSPHHFTDVLNFAEKTLGGQTK-FILCGDWNAKHRQWGCT 126
Query: 323 VSNSYGYELLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDLSIC--TPQLASSLSWST 490
+ G L + + + I+ +G T + SAID SIC +L +S S
Sbjct: 127 RACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSICKGLGRLEKRISSS- 185
Query: 491 LCSTYNSDHYPIIISFP*NTCYCHMAK 571
+ +SDH PI++ +T + K
Sbjct: 186 --ADLSSDHLPILLEINLDTSNLFLQK 210
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 36.7 bits (81), Expect = 0.036
Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 5/147 (3%)
Frame = +2
Query: 146 SNCFSVIAAIVDGICFVSI-YVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSS 322
+N S + I C S+ + PH + N + + + F++ GD+N+ H WG +
Sbjct: 106 NNRRSEMIVIASVYCPPSLSWSPHHFTDVLNFAEKTLGGQTK-FILCGDWNAKHRQWGCT 164
Query: 323 VSNSYGYELLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDLSIC--TPQLASSLSWST 490
+ G L + + + I+ +G T + SAID SIC +L +S S
Sbjct: 165 RACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSICKGLGRLEKRISSS- 223
Query: 491 LCSTYNSDHYPIIISFP*NTCYCHMAK 571
+ +SDH PI++ +T + K
Sbjct: 224 --ADLSSDHLPILLEINLDTSNLFLQK 248
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 36.3 bits (80), Expect = 0.047
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 4/125 (3%)
Frame = +2
Query: 209 PHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLC-IL 385
PH + N + + + F++ GD+N+ H WG + + G L + + + I+
Sbjct: 12 PHHFTDVLNFAEKTLGGQTK-FILCGDWNAKHRQWGCTRACQRGTALYEAVQADPMAEII 70
Query: 386 NSGSPTRLT-KPGEVISAIDLSIC--TPQLASSLSWSTLCSTYNSDHYPIIISFP*NTCY 556
+G T + SAID SIC +L +S S + +SDH PI++ +T
Sbjct: 71 ATGCATHFPHDTRKNPSAIDFSICKGLGRLEKRISSS---ADLSSDHLPILLEINLDTST 127
Query: 557 CHMAK 571
+ K
Sbjct: 128 LFLQK 132
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 35.9 bits (79), Expect = 0.062
Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 3/145 (2%)
Frame = +2
Query: 146 SNCFSVIAAIVDGICFVSI-YVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSS 322
+N S + I C S+ + PH + N + + + F++ GD+N+ H WG +
Sbjct: 106 NNRRSEMIVIASVYCPPSLSWSPHHFTDVLNFAEKTLGGQTK-FILCGDWNAKHRQWGCT 164
Query: 323 VSNSYGYELLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDLSICTPQLASSLSWSTLC 496
+ G L + + + I+ +G T + SAID SIC L +
Sbjct: 165 RACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC-KGLGRLEKRISSV 223
Query: 497 STYNSDHYPIIISFP*NTCYCHMAK 571
+ +SDH PI++ +T + K
Sbjct: 224 ADLSSDHLPILLEINLDTSTLFLQK 248
>BT010287-1|AAQ23605.1| 831|Drosophila melanogaster LD40663p
protein.
Length = 831
Score = 29.9 bits (64), Expect = 4.1
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 663 PSAPLNDPILSYKQYNSDAPSSLNLT 740
P+AP++ P+ + Q++S AP+S LT
Sbjct: 660 PAAPISQPVQDFGQHHSSAPTSACLT 685
>AE013599-2854|AAF57580.2| 831|Drosophila melanogaster CG7417-PA
protein.
Length = 831
Score = 29.9 bits (64), Expect = 4.1
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 663 PSAPLNDPILSYKQYNSDAPSSLNLT 740
P+AP++ P+ + Q++S AP+S LT
Sbjct: 660 PAAPISQPVQDFGQHHSSAPTSACLT 685
>AE014134-3392|AAF53993.2| 241|Drosophila melanogaster CG2042-PA
protein.
Length = 241
Score = 29.1 bits (62), Expect = 7.1
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +2
Query: 284 GDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSGSPTRLTKPGEVIS 433
GD+N+ H WG+ N G L +++ + L +G P R + + ++
Sbjct: 57 GDWNTSHWLWGAERCNRRGRALANLVLSTGMSSLVTGGPKRFQEAVDTLT 106
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,177,051
Number of Sequences: 53049
Number of extensions: 660911
Number of successful extensions: 1428
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1424
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3602427675
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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